mfeMetab: mfeMetab Functionality for generating lake metabolism...

In MFEh2o/MFEUtilities: Utility functions for the MFE Database

mfeMetab Functionality for generating lake metabolism estimates from MFE database. Putting Solomon metabolism code into a function and adding some options for different K models. Also allows for pulling input data directly from MFE sensor database. WARNING! This function makes some modifications to your R workspace, which isn't best practice for R package functions. I don't have time to fix it now. It sets the system time zone, and it also saves your workspace to an .Rdata file. Use caution. -KG SEJ with code from CTS, JAZ, CRO, and CJT

Description

mfeMetab Functionality for generating lake metabolism estimates from MFE database. Putting Solomon metabolism code into a function and adding some options for different K models. Also allows for pulling input data directly from MFE sensor database. WARNING! This function makes some modifications to your R workspace, which isn't best practice for R package functions. I don't have time to fix it now. It sets the system time zone, and it also saves your workspace to an .Rdata file. Use caution. -KG SEJ with code from CTS, JAZ, CRO, and CJT

Usage

mfeMetab(
  lakeID,
  minDate,
  maxDate,
  outName,
  dirDump,
  maxZMix = 8,
  k = "cole&caraco",
  fluxDummyToggle = TRUE,
  bootstrap = "no",
  lat = 46.16,
  elev = 535,
  windHeight = 2,
  timeStep = 10,
  sensorDepth = 0.7
)

Arguments

lakeID	Lake to estimate metabolism for
minDate	First date to estimate metabolism for
maxDate	Last date to estimate metabolism for
outName	Text to use in lableing outputs, e.g. 'Acton2008'. Character. No default.
dirDump	Directory where outputs should be dumped, e.g. 'C:/GLEON/Acton/Results'. No default value.
maxZMix	Back up zmix if temp profile data is unavailable; defaults to 4, but should pick a value that makes sense.
k	Model for piston velocity - options are: "cole&caraco", a constant k600 specified by the desired value, or "read" (coming soon)
fluxDummyToggle	Use convention where atmospheric exchange is shut off during microstratification conditions.
lat	Latitude of lake, decimal degrees, north positive; defaults to UNDERC (46.15)
elev	Elevation of lake surface, m above sea level; defaults to UNDERC (518)
windHeight	Height above lake surface at which wind speed is measured, m; defaults to UNDERC (2)
timeStep	Time interval between DO measurements, minutes; defaults to 10 minutes
sensorDepth	Depth of DO sensor, m; defaults to UNDERC (0.7?)
bootstrapping	yes or no. Warning! Will take a while to run if yes. Defaults to no.

MFEh2o/MFEUtilities documentation built on May 6, 2023, 1:33 p.m.