Man pages for MG-RAST/matR
Metagenomics Analysis Tools
| BIOMannotations | Search and change row or column annotations of BIOM data |
| BIOMmerge | Merge BIOM data |
| BIOMrename | Change row and column identifiers of BIOM data |
| BIOMretrieval | Get annotation information of samples as BIOM data |
| BIOMsubset | Take part of (subset) BIOM data |
| boxplot.biom | Summarize BIOM data in boxplots |
| buildDemoSets | Build objects containing metagenome annotations as BIOM data |
| collapse | Collapse character vectors to a single string |
| demoObjects | BIOM annotation data for certain metagenomes and projects |
| demoSets | Get paths to files of metagenome and project IDs |
| dependencies | Install recommended packages |
| dir.MGRAST | List directory of projects |
| distx | Calculate distances with optional grouping and other features |
| getMetColumns | Get single field from column metadata |
| getMetRows | Get single field from row metadata |
| hazPackages | Check for presence of recommended packages |
| IDsets | Handle sets of metagenome and project IDs |
| image.biom | Display heatmap of BIOM data with optional dendrograms |
| metadata.character | Get metadata of projects and metagenomes |
| parAuto | Provide automatic par values |
| parMap | Determine par values according to a provided metadata mapping |
| princomp.biom | Compute and plot principal coordinates of BIOM data |
| rowstats | Apply selected significance test across rows |
| search.MGRAST | Find metagenomes matching specified criteria |
| stepper | Step through a demo line-by-line |
| step.through | Step through a demo line-by-line |
| subMetadata | Substitute for reference to row or column metadata |
| transform.biom | Apply mathematical transformations to BIOM data |
