FUTURE: Unified Parallel and Distributed Processing in R for Everyone

adept

Version: 1.1.2
GitHub: https://github.com/martakarass/adept
Source code: https://github.com/cran/adept
Date/Publication: 2019-06-18 06:50:03 UTC
Number of recursive dependencies: 96

Run revdep_details(, "adept") for more info

checking installed package size ... NOTE installed size is 5.4Mb sub-directories of 1Mb or more: doc 4.7Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘tibble’ All declared Imports should be used.

alookr

Version: 0.3.2
GitHub: https://github.com/choonghyunryu/alookr
Source code: https://github.com/cran/alookr
Date/Publication: 2020-06-07 16:50:07 UTC
Number of recursive dependencies: 207

Run revdep_details(, "alookr") for more info

checking whether package ‘alookr’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/future/revdep/checks/alookr/new/alookr.Rcheck/00install.out’ for details.

AlpsNMR

Version: 3.0.4
GitHub: NA
Source code: https://github.com/cran/AlpsNMR
Date/Publication: 2020-11-19
Number of recursive dependencies: 163

Run revdep_details(, "AlpsNMR") for more info

checking Rd \usage sections ... WARNING ``` ...

Undocumented arguments in documentation object 'confusion_matrix' ‘MVObj’ ‘model’

Undocumented arguments in documentation object 'model_VIP' ‘model’

Undocumented arguments in documentation object 'rdCV_PLS_RF' ‘X’ ‘Y’ ‘ID’ ‘scale’ ‘nRep’ ‘nOuter’ ‘nInner’ ‘varRatio’ ‘DA’ ‘fitness’ ‘method’ ‘nCompMax’ ‘methParam’ ‘ML’ ‘modReturn’ ‘logg’ ‘parallel’

Undocumented arguments in documentation object 'rdCV_PLS_RF_ML' ‘scale’ ‘nRep’ ‘nOuter’ ‘nInner’ ‘varRatio’ ‘DA’ ‘fitness’ ‘method’ ‘ML’ ‘modReturn’ ‘logg’ ‘parallel’

Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. ```
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘zip’ All declared Imports should be used.

aroma.core

Version: 3.2.1
GitHub: https://github.com/HenrikBengtsson/aroma.core
Source code: https://github.com/cran/aroma.core
Date/Publication: 2020-02-04 15:20:21 UTC
Number of recursive dependencies: 47

Run revdep_details(, "aroma.core") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

BAMBI

Version: 2.3.0
GitHub: https://github.com/c7rishi/BAMBI
Source code: https://github.com/cran/BAMBI
Date/Publication: 2020-06-19 13:50:07 UTC
Number of recursive dependencies: 49

Run revdep_details(, "BAMBI") for more info

checking installed package size ... NOTE installed size is 6.1Mb sub-directories of 1Mb or more: libs 5.6Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘stats4’ All declared Imports should be used.

batchtools

Version: 0.9.14
GitHub: https://github.com/mllg/batchtools
Source code: https://github.com/cran/batchtools
Date/Publication: 2020-10-21 20:50:03 UTC
Number of recursive dependencies: 79

Run revdep_details(, "batchtools") for more info

checking dependencies in R code ... NOTE ``` -------------------------------------------------------------------------- [[58525,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces:

Module: OpenFabrics (openib) Host: c4-dev2

Another transport will be used instead, although this may result in lower performance.

```

bcmaps

Version: 0.18.1
GitHub: https://github.com/bcgov/bcmaps
Source code: https://github.com/cran/bcmaps
Date/Publication: 2020-04-29 10:30:10 UTC
Number of recursive dependencies: 87

Run revdep_details(, "bcmaps") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘bcmapsdata’

blavaan

Version: 0.3-12
GitHub: NA
Source code: https://github.com/cran/blavaan
Date/Publication: 2020-11-12 07:10:03 UTC
Number of recursive dependencies: 114

Run revdep_details(, "blavaan") for more info

checking installed package size ... NOTE installed size is 66.5Mb sub-directories of 1Mb or more: libs 65.0Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

blockCV

Version: 2.1.1
GitHub: https://github.com/rvalavi/blockCV
Source code: https://github.com/cran/blockCV
Date/Publication: 2020-02-23 20:00:02 UTC
Number of recursive dependencies: 109

Run revdep_details(, "blockCV") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘biomod2’

brms

Version: 2.14.4
GitHub: https://github.com/paul-buerkner/brms
Source code: https://github.com/cran/brms
Date/Publication: 2020-11-03 06:40:22 UTC
Number of recursive dependencies: 210

Run revdep_details(, "brms") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’
checking installed package size ... NOTE installed size is 6.6Mb sub-directories of 1Mb or more: R 3.0Mb doc 2.7Mb

CLVTools

Version: 0.7.0
GitHub: https://github.com/bachmannpatrick/CLVTools
Source code: https://github.com/cran/CLVTools
Date/Publication: 2020-08-26 20:10:02 UTC
Number of recursive dependencies: 86

Run revdep_details(, "CLVTools") for more info

checking installed package size ... NOTE installed size is 12.6Mb sub-directories of 1Mb or more: libs 11.4Mb

codebook

Version: 0.9.2
GitHub: https://github.com/rubenarslan/codebook
Source code: https://github.com/cran/codebook
Date/Publication: 2020-06-06 23:40:03 UTC
Number of recursive dependencies: 198

Run revdep_details(, "codebook") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘graphics’ ‘jsonlite’ ‘rlang’ ‘tidyselect’ ‘vctrs’ All declared Imports should be used.
checking data for non-ASCII characters ... NOTE Note: found 65 marked UTF-8 strings

cSEM

Version: 0.3.0
GitHub: https://github.com/M-E-Rademaker/cSEM
Source code: https://github.com/cran/cSEM
Date/Publication: 2020-10-12 16:40:03 UTC
Number of recursive dependencies: 119

Run revdep_details(, "cSEM") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Rdpack’ All declared Imports should be used.

datapackage.r

Version: 1.3.1
GitHub: https://github.com/frictionlessdata/datapackage-r
Source code: https://github.com/cran/datapackage.r
Date/Publication: 2020-05-06 22:10:09 UTC
Number of recursive dependencies: 114

Run revdep_details(, "datapackage.r") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘iterators’ ‘readr’ All declared Imports should be used.

delayed

Version: 0.3.0
GitHub: https://github.com/tlverse/delayed
Source code: https://github.com/cran/delayed
Date/Publication: 2020-02-28 11:40:02 UTC
Number of recursive dependencies: 74

Run revdep_details(, "delayed") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘assertthat’ All declared Imports should be used.

dragon

Version: 1.1.0
GitHub: https://github.com/sjspielman/dragon
Source code: https://github.com/cran/dragon
Date/Publication: 2020-12-08 08:10:15 UTC
Number of recursive dependencies: 129

Run revdep_details(, "dragon") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘htmltools’ All declared Imports should be used.

EFAtools

Version: 0.3.0
GitHub: https://github.com/mdsteiner/EFAtools
Source code: https://github.com/cran/EFAtools
Date/Publication: 2020-11-04 18:00:02 UTC
Number of recursive dependencies: 88

Run revdep_details(, "EFAtools") for more info

checking installed package size ... NOTE installed size is 7.4Mb sub-directories of 1Mb or more: doc 1.0Mb libs 5.5Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

EpiNow2

Version: 1.3.1
GitHub: NA
Source code: https://github.com/cran/EpiNow2
Date/Publication: 2020-11-22 14:20:05 UTC
Number of recursive dependencies: 149

Run revdep_details(, "EpiNow2") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘EpiSoon’
checking installed package size ... NOTE installed size is 137.8Mb sub-directories of 1Mb or more: libs 136.4Mb

foieGras

Version: 0.6-9
GitHub: https://github.com/ianjonsen/foieGras
Source code: https://github.com/cran/foieGras
Date/Publication: 2020-07-22 21:50:02 UTC
Number of recursive dependencies: 123

Run revdep_details(, "foieGras") for more info

checking installed package size ... NOTE installed size is 38.3Mb sub-directories of 1Mb or more: libs 37.2Mb

forecastML

Version: 0.9.0
GitHub: https://github.com/nredell/forecastML
Source code: https://github.com/cran/forecastML
Date/Publication: 2020-05-07 15:10:17 UTC
Number of recursive dependencies: 98

Run revdep_details(, "forecastML") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘dtplyr’ All declared Imports should be used.

GetBCBData

Version: 0.5
GitHub: https://github.com/msperlin/GetBCBData
Source code: https://github.com/cran/GetBCBData
Date/Publication: 2019-04-23 10:10:29 UTC
Number of recursive dependencies: 106

Run revdep_details(, "GetBCBData") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RCurl’ ‘lubridate’ ‘readr’ ‘stats’ All declared Imports should be used.

googleTagManageR

Version: 0.1.6
GitHub: NA
Source code: https://github.com/cran/googleTagManageR
Date/Publication: 2020-10-05 13:20:10 UTC
Number of recursive dependencies: 67

Run revdep_details(, "googleTagManageR") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘assertthat’ ‘future’ ‘httr’ ‘jsonlite’ All declared Imports should be used.

grattan

Version: 1.9.0.0
GitHub: https://github.com/HughParsonage/grattan
Source code: https://github.com/cran/grattan
Date/Publication: 2020-07-13 14:20:06 UTC
Number of recursive dependencies: 117

Run revdep_details(, "grattan") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'taxstats', 'taxstats1516'

gWQS

Version: 3.0.1
GitHub: NA
Source code: https://github.com/cran/gWQS
Date/Publication: 2020-11-19 15:00:03 UTC
Number of recursive dependencies: 106

Run revdep_details(, "gWQS") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used.

hal9001

Version: 0.2.6
GitHub: https://github.com/tlverse/hal9001
Source code: https://github.com/cran/hal9001
Date/Publication: 2020-06-27 04:50:07 UTC
Number of recursive dependencies: 93

Run revdep_details(, "hal9001") for more info

checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: libs 5.5Mb

IFAA

Version: 1.0.0
GitHub: https://github.com/gitlzg/IFAA
Source code: https://github.com/cran/IFAA
Date/Publication: 2020-11-04 15:00:09 UTC
Number of recursive dependencies: 39

Run revdep_details(, "IFAA") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘expm’ ‘rlecuyer’ All declared Imports should be used.

iml

Version: 0.10.1
GitHub: https://github.com/christophM/iml
Source code: https://github.com/cran/iml
Date/Publication: 2020-09-24 12:30:14 UTC
Number of recursive dependencies: 159

Run revdep_details(, "iml") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘keras’ All declared Imports should be used.

infercnv

Version: 1.6.0
GitHub: https://github.com/broadinstitute/inferCNV
Source code: https://github.com/cran/infercnv
Date/Publication: 2020-10-27
Number of recursive dependencies: 126

Run revdep_details(, "infercnv") for more info

checking examples ... ERROR ``` ...
- ref_title="References (Cells)",
- cluster_by_groups=TRUE,
- x.center=1,
- x.range="auto",
- hclust_method='ward.D',
- color_safe_pal=FALSE,
- output_filename="infercnv",
- output_format="png",
- png_res=300,
- dynamic_resize=0
- ) INFO [2020-12-09 15:31:52] ::plot_cnv:Start INFO [2020-12-09 15:31:52] ::plot_cnv:Current data dimensions (r,c)=4613,20 Total=94613.7345076583 Min=0.459691019720342 Max=2.53323815685956. INFO [2020-12-09 15:31:52] ::plot_cnv:Depending on the size of the matrix this may take a moment. INFO [2020-12-09 15:31:52] plot_cnv(): auto thresholding at: (0.510779 , 1.489221) Warning in png(paste(out_dir, paste(output_filename, ".png", sep = ""), : unable to open connection to X11 display '' Error in .External2(C_X11, paste0("png::", filename), g$width, g$height, : unable to start device PNG Calls: plot_cnv -> png Execution halted ```
checking installed package size ... NOTE installed size is 5.0Mb sub-directories of 1Mb or more: extdata 3.1Mb
checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘HiddenMarkov:::makedensity’ See the note in ?`:::` about the use of this operator.

inlinedocs

Version: 2019.12.5
GitHub: https://github.com/tdhock/inlinedocs
Source code: https://github.com/cran/inlinedocs
Date/Publication: 2019-12-05 23:30:07 UTC
Number of recursive dependencies: 7

Run revdep_details(, "inlinedocs") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘R.methodsS3’

ItemResponseTrees

Version: 0.2.5
GitHub: https://github.com/hplieninger/ItemResponseTrees
Source code: https://github.com/cran/ItemResponseTrees
Date/Publication: 2020-05-06 22:00:15 UTC
Number of recursive dependencies: 123

Run revdep_details(, "ItemResponseTrees") for more info

checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'fit.irtree_model.Rd': ‘[MplusAutomation:MplusAutomation-package]{MplusAutomation}’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```

lidR

Version: 3.0.4
GitHub: https://github.com/Jean-Romain/lidR
Source code: https://github.com/cran/lidR
Date/Publication: 2020-10-10 21:40:03 UTC
Number of recursive dependencies: 160

Run revdep_details(, "lidR") for more info

checking installed package size ... NOTE installed size is 12.2Mb sub-directories of 1Mb or more: extdata 1.1Mb libs 8.7Mb

lmtp

Version: 0.0.5
GitHub: NA
Source code: https://github.com/cran/lmtp
Date/Publication: 2020-07-18 09:10:02 UTC
Number of recursive dependencies: 86

Run revdep_details(, "lmtp") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘sl3’
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘nnls’ ‘utils’ All declared Imports should be used.

methyvim

Version: 1.11.0
GitHub: https://github.com/nhejazi/methyvim
Source code: https://github.com/cran/methyvim
Date/Publication: 2020-04-27
Number of recursive dependencies: 211

Run revdep_details(, "methyvim") for more info

checking tests ... `` ... ── ERROR (test-methyvim.R:22:1): (code run outside oftest_that()`) ─────────── Error: 'names' attribute [8] must be the same length as the vector [1] Backtrace: █
1. ├─base::suppressWarnings(...) test-methyvim.R:22:0
2. │ └─base::withCallingHandlers(...)
3. └─methyvim::methyvim(...)
4. ├─base::colnames<-(...)
5. └─base::colnames<-(...)
── Warning (test-set_parallel.R:9:3): registers BiocParallel::DoparParam by defa Strategy 'multiprocess' is deprecated in future (>= 1.20.0). Instead, explicitly specify either 'multisession' or 'multicore'. In the current R session, 'multiprocess' equals 'multicore'.

══ testthat results ═══════════════════════════════════════════════════════════ Warning (test-cluster_sites.R:4:1): (code run outside of test_that()) ERROR (test-methyvim.R:22:1): (code run outside of test_that()) Warning (test-set_parallel.R:9:3): registers BiocParallel::DoparParam by default for parallel=TRUE

[ FAIL 1 | WARN 2 | SKIP 0 | PASS 34 ] Error: Test failures Execution halted ```
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘tmle.npvi’

MineICA

Version: 1.30.0
GitHub: NA
Source code: https://github.com/cran/MineICA
Date/Publication: 2020-10-27
Number of recursive dependencies: 210

Run revdep_details(, "MineICA") for more info

checking running R code from vignettes ... `` ‘MineICA.Rnw’... failed ERROR Errors in running code in vignettes: when running code in ‘MineICA.Rnw’ ... [1] "Comp 1" Scale for 'x' is already present. Adding another scale for 'x', which will replace the existing scale. Warning:axis.ticks.marginis deprecated. Please setmarginproperty ofaxis.text` instead Warning in grDevices::png(..., res = dpi, units = "in") : unable to open connection to X11 display ''

When sourcing ‘MineICA.R’: Error: task 1 failed - "unable to start device PNG" Execution halted ```
checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'Alist.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'Slist.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'class-IcaSet.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'getComp.Rd': ‘class-IcaSet’

Missing link or links in documentation object 'runAn.Rd': ‘[Category:class-GOHyperGParams]{GOHyperGParams}’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```
checking for missing documentation entries ... WARNING Undocumented S4 classes: ‘MineICAParams’ All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
checking package dependencies ... NOTE ``` Package which this enhances but not available for checking: ‘doMC’

Depends: includes the non-default packages: 'BiocGenerics', 'Biobase', 'plyr', 'ggplot2', 'scales', 'foreach', 'xtable', 'biomaRt', 'gtools', 'GOstats', 'cluster', 'marray', 'mclust', 'RColorBrewer', 'colorspace', 'igraph', 'Rgraphviz', 'graph', 'annotate', 'Hmisc', 'fastICA', 'JADE' Adding so many packages to the search path is excessive and importing selectively is preferable. ```
checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘biomaRt’ ‘GOstats’ ‘cluster’ ‘mclust’ ‘igraph’ A package should be listed in only one of these fields.
checking dependencies in R code ... NOTE 'library' or 'require' call to ‘GOstats’ which was already attached by Depends. Please remove these calls from your code. Namespace in Imports field not imported from: ‘lumiHumanAll.db’ All declared Imports should be used. Packages in Depends field not imported from: ‘GOstats’ ‘Hmisc’ ‘JADE’ ‘RColorBrewer’ ‘Rgraphviz’ ‘annotate’ ‘biomaRt’ ‘cluster’ ‘colorspace’ ‘fastICA’ ‘foreach’ ‘ggplot2’ ‘graph’ ‘gtools’ ‘igraph’ ‘marray’ ‘mclust’ ‘methods’ ‘plyr’ ‘scales’ ‘xtable’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. ':::' calls which should be '::': ‘Biobase:::annotation<-’ ‘Biobase:::validMsg’ ‘fpc:::pamk’ ‘lumi:::getChipInfo’ ‘mclust:::adjustedRandIndex’ See the note in ?`:::` about the use of this operator. Unexported object imported by a ':::' call: ‘Biobase:::isValidVersion’ See the note in ?`:::` about the use of this operator.
checking R code for possible problems ... NOTE ... position_jitter pushViewport quantile rainbow_hcl rcorr read.table reorder scale_colour_gradientn scale_colour_manual scale_fill_manual scale_linetype_manual scale_shape_manual scale_x_continuous scale_x_discrete scale_y_continuous shapiro.test sigCategories terrain_hcl theme theme_bw title tkplot.fit.to.screen unit useMart validObject vcount viewport wilcox.test write.table xlab xtable Consider adding importFrom("grDevices", "cm.colors", "dev.off", "graphics.off", "heat.colors", "pdf") importFrom("graphics", "abline", "axis", "frame", "hist", "layout", "legend", "mtext", "par", "plot.new", "points", "title") importFrom("methods", "callNextMethod", "new", "validObject") importFrom("stats", "aggregate", "as.dendrogram", "as.dist", "as.hclust", "chisq.test", "cor", "cor.test", "cutree", "dist", "hclust", "kmeans", "kruskal.test", "lm", "median", "na.omit", "order.dendrogram", "p.adjust", "quantile", "reorder", "shapiro.test", "wilcox.test") importFrom("utils", "capture.output", "combn", "read.table", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods').

origami

Version: 1.0.3
GitHub: https://github.com/tlverse/origami
Source code: https://github.com/cran/origami
Date/Publication: 2020-01-16 22:40:02 UTC
Number of recursive dependencies: 86

Run revdep_details(, "origami") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘glmnet’

PCRedux

Version: 1.0-6
GitHub: https://github.com/PCRuniversum/PCRedux
Source code: https://github.com/cran/PCRedux
Date/Publication: 2020-03-06 08:10:02 UTC
Number of recursive dependencies: 149

Run revdep_details(, "PCRedux") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘FFTrees’

phylolm

Version: 2.6.2
GitHub: https://github.com/lamho86/phylolm
Source code: https://github.com/cran/phylolm
Date/Publication: 2020-06-22 05:10:08 UTC
Number of recursive dependencies: 44

Run revdep_details(, "phylolm") for more info

checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘geiger’, ‘caper’

plumber

Version: 1.0.0
GitHub: https://github.com/rstudio/plumber
Source code: https://github.com/cran/plumber
Date/Publication: 2020-09-14 21:40:02 UTC
Number of recursive dependencies: 67

Run revdep_details(, "plumber") for more info

checking tests ... ``` ... Warning (test-async.R:356:3): accessing two images created using promises does not create an error FAILURE (test-async.R:356:3): accessing two images created using promises does not create an error Warning (test-async.R:361:3): accessing two images created using promises does not create an error FAILURE (test-async.R:361:3): accessing two images created using promises does not create an error FAILURE (test-async.R:393:3): accessing two images created using promises does not create an error FAILURE (test-async.R:395:3): accessing two images created using promises does not create an error FAILURE (test-async.R:396:3): accessing two images created using promises does not create an error FAILURE (test-async.R:398:3): accessing two images created using promises does not create an error FAILURE (test-async.R:400:3): accessing two images created using promises does not create an error FAILURE (test-async.R:401:3): accessing two images created using promises does not create an error FAILURE (test-async.R:404:3): accessing two images created using promises does not create an error Warning (test-endpoint-aroundexec.R:137:3): not producing an image produces an error FAILURE (test-endpoint-aroundexec.R:137:3): not producing an image produces an error FAILURE (test-endpoint-aroundexec.R:142:3): not producing an image produces an error Warning (test-zzz-plumb_api.R:64:3): all example plumber apis plumb Warning (test-zzzz-include.R:29:5): Includes work FAILURE (test-zzzz-include.R:30:5): Includes work

[ FAIL 12 | WARN 5 | SKIP 12 | PASS 1842 ] Error: Test failures Execution halted ```

promises

Version: 1.1.1
GitHub: https://github.com/rstudio/promises
Source code: https://github.com/cran/promises
Date/Publication: 2020-06-09 21:50:02 UTC
Number of recursive dependencies: 54

Run revdep_details(, "promises") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘purrr’

Prostar

Version: 1.22.0
GitHub: NA
Source code: https://github.com/cran/Prostar
Date/Publication: 2020-10-27
Number of recursive dependencies: 281

Run revdep_details(, "Prostar") for more info

checking package dependencies ... ERROR ``` Package required and available but unsuitable version: ‘DAPAR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

PSCBS

Version: 0.65.0
GitHub: https://github.com/HenrikBengtsson/PSCBS
Source code: https://github.com/cran/PSCBS
Date/Publication: 2019-05-05 22:40:09 UTC
Number of recursive dependencies: 90

Run revdep_details(, "PSCBS") for more info

checking running R code from vignettes ... ``` ...
- aspectRatio = 0.35, {
- plotTracks(fit)
- }) Warning in png("figures/PairedPSCBS,exData,chr01,CBS,tracks.png", width = 840, : unable to open connection to X11 display ''
When sourcing ‘CBS.R’: Error: unable to start device PNG Execution halted when running code in ‘PairedPSCBS.tex.rsp’ ...

toPNG(fullname, tags = c(class(fit)[1], "tracks"), + aspectRatio = 0.6, { + plotTracks(fit) + }) Warning in png("figures/PairedPSCBS,exData,chr01,PairedPSCBS,tracks.png", : unable to open connection to X11 display ''

When sourcing ‘PairedPSCBS.R’: Error: unable to start device PNG Execution halted ```

QDNAseq

Version: 1.26.0
GitHub: https://github.com/ccagc/QDNAseq
Source code: https://github.com/cran/QDNAseq
Date/Publication: 2020-10-27
Number of recursive dependencies: 72

Run revdep_details(, "QDNAseq") for more info

checking running R code from vignettes ... ``` ‘QDNAseq.Rnw’... failed ERROR Errors in running code in vignettes: when running code in ‘QDNAseq.Rnw’ ... experimentData: use 'experimentData(object)' Annotation:

png("rawprofile.png") Warning in png("rawprofile.png") : unable to open connection to X11 display ''

When sourcing ‘QDNAseq.R’: Error: unable to start device PNG Execution halted ```
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

rBiasCorrection

Version: 0.2.4
GitHub: https://github.com/kapsner/rBiasCorrection
Source code: https://github.com/cran/rBiasCorrection
Date/Publication: 2020-11-16 17:20:02 UTC
Number of recursive dependencies: 134

Run revdep_details(, "rBiasCorrection") for more info

checking examples ... ERROR ``` ... > > gdat <- rBiasCorrection::example._plot.df_agg > > coef_h <- rBiasCorrection::example._plot_coef_h > coef_c <- rBiasCorrection::example._plot_coef_c > > create_exampleplot(
- data = gdat,
- coef_hyper = coef_h,
- coef_cubic = coef_c,
- plot_height = 5,
- plot_width = 7.5,
- plot_textsize = 1,
- filename = paste0(tempdir(), "/exampleplot.png")
- ) Warning in grDevices::png(..., res = dpi, units = "in") : unable to open connection to X11 display '' Error in .External2(C_X11, paste0("png::", filename), g$width, g$height, : unable to start device PNG Calls: create_exampleplot -> -> dev -> Execution halted ```
checking tests ... ``` ... █
1. └─rBiasCorrection::create_exampleplot(...) test-plotting.R:227:4
2. └─ggplot2::ggsave(...)
3. └─ggplot2:::dev(...)
4. └─grDevices::png(..., res = dpi, units = "in")
── Skipped tests ────────────────────────────────────────────────────────────── ● On CRAN (2)

══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-biascorrection.R:15:3): correct functioning of BiasCorrection, data type 1 Warning (test-plotting.R:63:5): plotting_utility ERROR (test-plotting.R:63:5): plotting_utility Warning (test-plotting.R:178:6): createbarerrorplots ERROR (test-plotting.R:178:6): createbarerrorplots Warning (test-plotting.R:227:5): create_exampleplot ERROR (test-plotting.R:227:5): create_exampleplot

[ FAIL 4 | WARN 3 | SKIP 2 | PASS 180 ] Error: Test failures Execution halted ```

regmedint

Version: 0.2.0
GitHub: https://github.com/kaz-yos/regmedint
Source code: https://github.com/cran/regmedint
Date/Publication: 2020-11-16 12:30:07 UTC
Number of recursive dependencies: 111

Run revdep_details(, "regmedint") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Deriv’ All declared Imports should be used.

robotstxt

Version: 0.7.13
GitHub: https://github.com/ropensci/robotstxt
Source code: https://github.com/cran/robotstxt
Date/Publication: 2020-09-03 19:30:02 UTC
Number of recursive dependencies: 66

Run revdep_details(, "robotstxt") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

sapfluxnetr

Version: 0.1.1
GitHub: https://github.com/sapfluxnet/sapfluxnetr
Source code: https://github.com/cran/sapfluxnetr
Date/Publication: 2020-08-27 12:50:02 UTC
Number of recursive dependencies: 77

Run revdep_details(, "sapfluxnetr") for more info

checking data for non-ASCII characters ... NOTE Note: found 4 marked UTF-8 strings

sctransform

Version: 0.3.1
GitHub: https://github.com/ChristophH/sctransform
Source code: https://github.com/cran/sctransform
Date/Publication: 2020-10-08 12:00:02 UTC
Number of recursive dependencies: 70

Run revdep_details(, "sctransform") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘glmGamPoi’

seer

Version: 1.1.5
GitHub: NA
Source code: https://github.com/cran/seer
Date/Publication: 2020-06-08 05:00:02 UTC
Number of recursive dependencies: 111

Run revdep_details(, "seer") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘MASS’ All declared Imports should be used.

Seurat

Version: 3.2.2
GitHub: https://github.com/satijalab/seurat
Source code: https://github.com/cran/Seurat
Date/Publication: 2020-09-26 04:30:12 UTC
Number of recursive dependencies: 228

Run revdep_details(, "Seurat") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘loomR’
checking installed package size ... NOTE installed size is 11.1Mb sub-directories of 1Mb or more: R 1.2Mb libs 9.1Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘loomR’

shiny

Version: 1.5.0
GitHub: https://github.com/rstudio/shiny
Source code: https://github.com/cran/shiny
Date/Publication: 2020-06-23 13:30:03 UTC
Number of recursive dependencies: 101

Run revdep_details(, "shiny") for more info

checking tests ... ``` ... ══ testthat results ═══════════════════════════════════════════════════════════ Warning (test-mock-session.R:89:3): renderImage supported ERROR (test-mock-session.R:89:3): renderImage supported Warning (test-plot-coordmap.R:23:3): ggplot coordmap ERROR (test-plot-coordmap.R:23:3): ggplot coordmap Warning (test-plot-coordmap.R:85:3): ggplot coordmap with facet_wrap ERROR (test-plot-coordmap.R:85:3): ggplot coordmap with facet_wrap Warning (test-plot-coordmap.R:134:3): ggplot coordmap with facet_grid ERROR (test-plot-coordmap.R:134:3): ggplot coordmap with facet_grid Warning (test-plot-coordmap.R:219:3): ggplot coordmap with 2D facet_grid ERROR (test-plot-coordmap.R:219:3): ggplot coordmap with 2D facet_grid Warning (test-plot-coordmap.R:269:3): ggplot coordmap with various data types ERROR (test-plot-coordmap.R:269:3): ggplot coordmap with various data types Warning (test-plot-coordmap.R:323:3): ggplot coordmap with various scales and coords ERROR (test-plot-coordmap.R:323:3): ggplot coordmap with various scales and coords Warning (test-plot-coordmap.R:381:3): ggplot coordmap maintains discrete limits ERROR (test-plot-coordmap.R:381:3): ggplot coordmap maintains discrete limits

[ FAIL 8 | WARN 8 | SKIP 7 | PASS 1012 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 10.8Mb sub-directories of 1Mb or more: R 1.7Mb www 8.1Mb

shinyrecap

Version: 0.1.0
GitHub: NA
Source code: https://github.com/cran/shinyrecap
Date/Publication: 2019-01-19 23:40:03 UTC
Number of recursive dependencies: 92

Run revdep_details(, "shinyrecap") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘CARE1’ ‘LCMCR’ ‘coda’ ‘conting’ ‘dga’ ‘future’ ‘ggplot2’ ‘ipc’ ‘promises’ ‘reshape’ ‘shinycssloaders’ ‘testthat’ All declared Imports should be used.

sigminer

Version: 1.1.0
GitHub: https://github.com/ShixiangWang/sigminer
Source code: https://github.com/cran/sigminer
Date/Publication: 2020-11-11 07:40:06 UTC
Number of recursive dependencies: 197

Run revdep_details(, "sigminer") for more info

checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: extdata 3.9Mb

simhelpers

Version: 0.1.0
GitHub: https://github.com/meghapsimatrix/simhelpers
Source code: https://github.com/cran/simhelpers
Date/Publication: 2020-03-31 15:00:06 UTC
Number of recursive dependencies: 101

Run revdep_details(, "simhelpers") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘magrittr’ ‘purrr’ ‘rlang’ ‘utils’ All declared Imports should be used.

skpr

Version: 0.64.2
GitHub: https://github.com/tylermorganwall/skpr
Source code: https://github.com/cran/skpr
Date/Publication: 2020-03-04 20:20:02 UTC
Number of recursive dependencies: 136

Run revdep_details(, "skpr") for more info

checking installed package size ... NOTE installed size is 41.4Mb sub-directories of 1Mb or more: libs 39.9Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘nlme’ All declared Imports should be used.

solitude

Version: 1.1.1
GitHub: https://github.com/talegari/solitude
Source code: https://github.com/cran/solitude
Date/Publication: 2020-09-17 10:10:07 UTC
Number of recursive dependencies: 148

Run revdep_details(, "solitude") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘lgr’ All declared Imports should be used.

spacey

Version: 0.1.1
GitHub: https://github.com/mikemahoney218/spacey
Source code: https://github.com/cran/spacey
Date/Publication: 2020-03-14 18:50:02 UTC
Number of recursive dependencies: 98

Run revdep_details(, "spacey") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘rgdal’ All declared Imports should be used.

spatialwarnings

Version: 2.0.0
GitHub: https://github.com/spatial-ews/spatialwarnings
Source code: https://github.com/cran/spatialwarnings
Date/Publication: 2020-05-14 17:10:06 UTC
Number of recursive dependencies: 81

Run revdep_details(, "spatialwarnings") for more info

checking installed package size ... NOTE installed size is 5.7Mb sub-directories of 1Mb or more: libs 4.7Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘tidyr’ All declared Imports should be used.

stars

Version: 0.4-3
GitHub: https://github.com/r-spatial/stars
Source code: https://github.com/cran/stars
Date/Publication: 2020-07-08 11:20:03 UTC
Number of recursive dependencies: 134

Run revdep_details(, "stars") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘starsdata’
checking installed package size ... NOTE installed size is 8.0Mb sub-directories of 1Mb or more: doc 1.9Mb nc 4.5Mb

tableschema.r

Version: 1.1.1
GitHub: https://github.com/frictionlessdata/tableschema-r
Source code: https://github.com/cran/tableschema.r
Date/Publication: 2020-03-12 12:40:02 UTC
Number of recursive dependencies: 67

Run revdep_details(, "tableschema.r") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘iterators’ All declared Imports should be used.
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘parsedate’

text

Version: 0.9.0
GitHub: https://github.com/OscarKjell/text
Source code: https://github.com/cran/text
Date/Publication: 2020-11-23 09:30:02 UTC
Number of recursive dependencies: 140

Run revdep_details(, "text") for more info

checking data for non-ASCII characters ... NOTE Note: found 3 marked UTF-8 strings

treeHMM

Version: 0.1.1
GitHub: NA
Source code: https://github.com/cran/treeHMM
Date/Publication: 2019-12-12 17:10:02 UTC
Number of recursive dependencies: 11

Run revdep_details(, "treeHMM") for more info

checking whether package ‘treeHMM’ can be installed ... WARNING Found the following significant warnings: Warning: Strategy 'multiprocess' is deprecated in future (>= 1.20.0). Instead, explicitly specify either 'multisession' or 'multicore'. In the current R session, 'multiprocess' equals 'multicore'. See ‘/c4/home/henrik/repositories/future/revdep/checks/treeHMM/new/treeHMM.Rcheck/00install.out’ for details.
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Matrix’ All declared Imports should be used.

TSstudio

Version: 0.1.6
GitHub: https://github.com/RamiKrispin/TSstudio
Source code: https://github.com/cran/TSstudio
Date/Publication: 2020-01-21 05:30:02 UTC
Number of recursive dependencies: 140

Run revdep_details(, "TSstudio") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘forecastHybrid’ All declared Imports should be used.

txshift

Version: 0.3.4
GitHub: https://github.com/nhejazi/txshift
Source code: https://github.com/cran/txshift
Date/Publication: 2020-09-25 13:50:02 UTC
Number of recursive dependencies: 98

Run revdep_details(, "txshift") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘sl3’
checking Rd cross-references ... NOTE Unknown package ‘sl3’ in Rd xrefs

MINATILO/FUTURE documentation built on Dec. 17, 2021, 1:21 a.m.

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MINATILO/FUTURE Unified Parallel and Distributed Processing in R for Everyone

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MINATILO/FUTURE
Unified Parallel and Distributed Processing in R for Everyone

revdep/problems.md
In MINATILO/FUTURE: Unified Parallel and Distributed Processing in R for Everyone