revdep/problems.md

In MINATILO/R.cache: Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations

aroma.core

• Version: 3.2.2
• GitHub: https://github.com/HenrikBengtsson/aroma.core
• Source code: https://github.com/cran/aroma.core
• Date/Publication: 2021-01-05 05:10:12 UTC
• Number of recursive dependencies: 51

Run revdep_details(, "aroma.core") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

CoRegFlux

• Version: 1.6.0
• GitHub: NA
• Source code: https://github.com/cran/CoRegFlux
• Date/Publication: 2020-10-27
• Number of recursive dependencies: 91

Run revdep_details(, "CoRegFlux") for more info

In both

• checking examples ... ERROR ``` Running examples in ‘CoRegFlux-Ex.R’ failed The error most likely occurred in:

  Name: ODCurveToFluxCurves

  Title: ODCurveToFluxCurves

  Aliases: ODCurveToFluxCurves

  ** Examples

  data(iMM904) ... ODtoflux<-ODCurveToFluxCurves(model = iMM904, + ODs = ODs,times = times, metabolites_rates = metabolites_rates) Joining by: metabolites_id Loading required package: glpkAPI Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘glpkAPI’ Error in checkDefaultMethod(solver, method, pType) : package ‘glpkAPI’ not found Calls: ODCurveToFluxCurves ... get_fba_fluxes_from_observations -> -> -> .local -> sysBiolAlg Execution halted ```

• checking tests ... ``` ERROR Running the tests in ‘tests/Test.R’ failed. Last 50 lines of output:

  Error (test_DFBAsimulationFunctions.R:19:5): Simulation without CoRegNet finishes Error: package 'glpkAPI' not found Backtrace: 1. testthat::expect_type(...) test_DFBAsimulationFunctions.R:19:4 4. CoRegFlux::Simulation(...) 5. CoRegFlux:::Simulation_Step(...) ... 1. testthat::expect_true(...) test_MetabolicModelFunctions.R:13:5 4. base::is.data.frame(...) ────────────────────────────────────────────────────────────────────────────────

  ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 134.9 s

  [ FAIL 6 | WARN 2 | SKIP 0 | PASS 25 ] Error: Test failures Execution halted ```

• checking package dependencies ... NOTE Package suggested but not available for checking: ‘glpkAPI’

DiceView

• Version: 2.0-1
• GitHub: https://github.com/IRSN/DiceView
• Source code: https://github.com/cran/DiceView
• Date/Publication: 2020-11-27 16:30:02 UTC
• Number of recursive dependencies: 16

Run revdep_details(, "DiceView") for more info

In both

• checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘rgl’

MSnID

• Version: 1.24.0
• GitHub: NA
• Source code: https://github.com/cran/MSnID
• Date/Publication: 2020-10-27
• Number of recursive dependencies: 141

Run revdep_details(, "MSnID") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘BiocGenerics’ ‘BiocStyle’ ‘RUnit’ ‘ggplot2’ ‘msmsTests’ ‘xtable’ All declared Imports should be used.

• checking R code for possible problems ... NOTE .read_mzIDs.mzR.engine.single.file: no visible binding for global variable ‘peptideRef’ Undefined global functions or variables: peptideRef

precommit

• Version: 0.1.3
• GitHub: https://github.com/lorenzwalthert/precommit
• Source code: https://github.com/cran/precommit
• Date/Publication: 2020-10-10 19:40:02 UTC
• Number of recursive dependencies: 88

Run revdep_details(, "precommit") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R.cache’ ‘docopt’ ‘here’ All declared Imports should be used.

QDNAseq

• Version: 1.26.0
• GitHub: https://github.com/ccagc/QDNAseq
• Source code: https://github.com/cran/QDNAseq
• Date/Publication: 2020-10-27
• Number of recursive dependencies: 72

Run revdep_details(, "QDNAseq") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

repmis

• Version: 0.5
• GitHub: https://github.com/christophergandrud/repmis
• Source code: https://github.com/cran/repmis
• Date/Publication: 2016-02-07 09:16:30
• Number of recursive dependencies: 19

Run revdep_details(, "repmis") for more info

In both

• checking package dependencies ... NOTE Package suggested but not available for checking: ‘xlsx’

stepR

• Version: 2.1-1
• GitHub: NA
• Source code: https://github.com/cran/stepR
• Date/Publication: 2020-08-26 16:10:06 UTC
• Number of recursive dependencies: 45

Run revdep_details(, "stepR") for more info

In both

• checking installed package size ... NOTE installed size is 11.1Mb sub-directories of 1Mb or more: libs 10.1Mb

MINATILO/R.cache documentation built on Dec. 17, 2021, 2:10 a.m.