GPL200.3pUTR.Words: Data: A probeset:3'-UTR word annotation matrix
In MPCary/DEXDATA.Celegans: C. elegans data files for DEXICA analysis
Description
This is a binary probeset annotation matrix containing Affymetrix probeset IDs in rows and
predicted 3'-UTR regulatory words (oligonucleotides) in columns. A value of 1 in the matrix
indicates that the word appears more often than expected by random chance in the 3'-UTR
of the gene to which the probeset has been mapped. Because 3'-UTRs vary in length between genes,
it is necessary to divide the number of observed occurences by the number of expected occurences
for each word in each 3'-UTR. If this value is greater than 0.5, we score the word as 'present',
and we score it as 'absent' if it is not. The 3'-UTR regulatory word dictionary was compiled
using the MobyDick algorithm (see https://www.ncbi.nlm.nih.gov/pubmed/10977067).
Usage
1
Format
A binary matrix with probeset IDs in rows and words in columns.
MPCary/DEXDATA.Celegans documentation built on May 4, 2019, 2:35 p.m.
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Description
This is a binary probeset annotation matrix containing Affymetrix probeset IDs in rows and predicted 3'-UTR regulatory words (oligonucleotides) in columns. A value of 1 in the matrix indicates that the word appears more often than expected by random chance in the 3'-UTR of the gene to which the probeset has been mapped. Because 3'-UTRs vary in length between genes, it is necessary to divide the number of observed occurences by the number of expected occurences for each word in each 3'-UTR. If this value is greater than 0.5, we score the word as 'present', and we score it as 'absent' if it is not. The 3'-UTR regulatory word dictionary was compiled using the MobyDick algorithm (see https://www.ncbi.nlm.nih.gov/pubmed/10977067).
Usage
1 |
Format
A binary matrix with probeset IDs in rows and words in columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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