API for MPIIComputationalEpigenetics/WSH_package
R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL
| Global functions | |
|---|---|
| VALID.SCORES | Man page |
| anno.split | Source code |
| calculate.entropy | Man page Source code |
| calculate.entropy.line | Source code |
| calculate.epipoly.line | Source code |
| calculate.epipolymorphism | Man page Source code |
| calculate.fdrp | Man page Source code |
| calculate.fdrp.by.chromosome | Man page Source code |
| calculate.fdrp.score | Man page Source code |
| calculate.fdrp.site | Man page Source code |
| calculate.mhl | Man page Source code |
| calculate.pdr | Man page Source code |
| calculate.pdr.by.chromosome | Man page Source code |
| calculate.pdr.site | Man page Source code |
| calculate.qfdrp | Man page Source code |
| classify.read | Source code |
| compute.discordant | Source code |
| compute.score | Man page Source code |
| compute.score.GRanges | Man page Source code |
| compute.score.rnb | Man page Source code |
| convert | Source code |
| create.annotation | Source code |
| create.genomebrowser.track | Man page Source code |
| get.option | Man page Source code |
| prepare.annotation | Source code |
| remove.sex.chromosomes | Source code |
| restrict | Source code |
| rnb.calculate.fdrp | Man page Source code |
| rnb.calculate.mhl | Man page Source code |
| rnb.calculate.pdr | Man page Source code |
| rnb.calculate.qfdrp | Man page Source code |
| run.haplotype.calculation | Man page Source code |
| run.methclone | Man page Source code |
| run.mhl.calculation | Man page Source code |
| set.option | Man page Source code |
| toCpGs | Source code |
| wsh.check.validity | Source code |
| wsh.run.example | Man page Source code |
