Man pages for MPIIComputationalEpigenetics/WSH_package
R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL
| calculate.entropy | calculate.entropy |
| calculate.epipolymorphism | calculate.epipolymorphism |
| calculate.fdrp | calculate.fdrp |
| calculate.fdrp.by.chromosome | calculate.fdrp.by.chromosome This function calculates the... |
| calculate.fdrp.score | calculate.fdrp.score |
| calculate.fdrp.site | calculate.fdrp.site This function compute the FDRP score for... |
| calculate.mhl | calculate.mhl |
| calculate.pdr | calculate.pdr |
| calculate.pdr.by.chromosome | calculate.pdr.by.chromosome |
| calculate.pdr.site | calculate.pdr.site This function computes the PDR score for a... |
| calculate.qfdrp | calculate.qfdrp |
| compute.score | compute.score |
| compute.score.GRanges | compute.score.GRanges |
| compute.score.rnb | compute.score.rnb |
| create.genomebrowser.track | create.genomebrowser.track |
| get.option | get.option Print the value of the global option |
| rnb.calculate.fdrp | rnb.calculate.fdrp |
| rnb.calculate.mhl | rnb.calculate.mhl |
| rnb.calculate.pdr | rnb.calculate.pdr |
| rnb.calculate.qfdrp | rnb.calculate.qfdrp |
| run.haplotype.calculation | run.haplotype.calculation |
| run.methclone | run.methclone |
| run.mhl.calculation | run.mhl.calculation |
| set.option | set.option |
| VALID.SCORES | main.R |
| wsh.run.example | wsh.run.example |
