Files in MSQ-123/CovidMutations
Mutation Analysis and Assay Validation Toolkit for COVID-19 (Coronavirus Disease 2019)
.Rbuildignore
.gitignore
CovidTools.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/AssayMutRatio.R
R/LastfiveNrMutation.R
R/MutByGene.R
R/data.R
R/doubleAssay.R
R/globalProteinMut.R
R/globalSNPprofile.R
R/indelSNP.R
R/mergeEvents.R
R/mutStat.R
R/nucmerRMD.R
R/plotMutAnno.R
R/plotMutProteins.R
README.md
data/assays.rda
data/chinalist.rda
data/covid_annot.rda
data/gene_position.rda
data/gff3.rda
data/nucmer.rda
data/nucmerr.rda
data/refseq.rda
inst/extdata/nucmer10.R
inst/extdata/nucmer10.zip
man/AssayMutRatio.Rd
man/LastfiveNrMutation.Rd
man/MutByGene.Rd
man/assays.Rd
man/chinalist.Rd
man/covid_annot.Rd
man/doubleAssay.Rd
man/figures/README-MutByGene-1.png
man/gene_position.Rd
man/gff3.Rd
man/globalProteinMut.Rd
man/globalSNPprofile.Rd
man/indelSNP.Rd
man/mergeEvents.Rd
man/mutStat.Rd
man/nucmer.Rd
man/nucmerRMD.Rd
man/nucmerr.Rd
man/plotMutAnno.Rd
man/plotMutProteins.Rd
man/refseq.Rd
tests/testthat.R
tests/testthat/test-assays.R
vignettes/.gitignore
vignettes/CDC-N-lastfive.png
vignettes/GISAID.png
vignettes/USACDC-N1.png
vignettes/bibliography.bib
vignettes/molecular_dia.bib
vignettes/url.bib
vignettes/vignette.Rmd
