plotMutAnno: Plot the mutation statistics after annotating the "nucmer"...
In MSQ-123/CovidMutations: Mutation Analysis and Assay Validation Toolkit for COVID-19 (Coronavirus Disease 2019)
Description
Usage
Arguments
Value
Examples
Description
Basic descriptions for the mutational events.
Usage
1
plotMutAnno(results = results, figureType = "MostMut", outdir = ".")
Arguments
results
The mutation effects provided by "indelSNP" function.
figureType
Figure type for: "MostMut", "MutPerSample", "VarClasses", "VarType", "NucleoEvents", "ProEvents".
outdir
The output directory.
Value
Plot the selected figure type as output.
Examples
1
2
3
4
5
data("covid_annot")
# make sure the covid_annot is a dataframe
covid_annot <- as.data.frame(covid_annot)
#outdir <- tempdir() specify your output directory
plotMutAnno(results = covid_annot,figureType = "MostMut", outdir = NULL)
MSQ-123/CovidMutations documentation built on Aug. 30, 2020, 12:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Basic descriptions for the mutational events.
Usage
1 | plotMutAnno(results = results, figureType = "MostMut", outdir = ".")
|
Arguments
results |
The mutation effects provided by "indelSNP" function. |
figureType |
Figure type for: "MostMut", "MutPerSample", "VarClasses", "VarType", "NucleoEvents", "ProEvents". |
outdir |
The output directory. |
Value
Plot the selected figure type as output.
Examples
1 2 3 4 5 | data("covid_annot")
# make sure the covid_annot is a dataframe
covid_annot <- as.data.frame(covid_annot)
#outdir <- tempdir() specify your output directory
plotMutAnno(results = covid_annot,figureType = "MostMut", outdir = NULL)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.