network_list: network_list.RData

In MTZimmer/RITANdata: This package contains the annotation and network data sets

Description

R list object containing network data resources and, when available, confidence scores for each interaction. Each resource was taken as-is from flat-file downloads and simplified into SIF files for expediency. Citation information for each cached resource can be accessed via attr(network_list, 'network_data_sources'). Some resources are queried using existing R packages. For example, we access STRING data through STRINGdb. Future versions of RITAN will leverage additional existing package services.

Usage

network_list

Format

A list of resources, one entry for each network resource. Each list element is a data.frame with 3 columns:

p1

protein or gene 1

edge_type

edge/interaction/connection type

p2

protein or gene 2

Value

A list of netowrk resources. Each entry contains a list of edges as a data.frame.

Author(s)

Michael T Zimmermann

Source

Multiple sources used. See our table in the RITAN network vignette for citation information.

Examples

print(names(network_list))

MTZimmer/RITANdata documentation built on May 8, 2019, 3:24 p.m.