| BCscore | Compute BC score between X and Y |
| buildGraphc | Constructs product graph |
| devsub | Compute deviation between matrices of coordinates X index I... |
| enrichloopc | enrich clique with neighbors |
| getNeighborsc | Get set of neighbors that could be added to the clique C |
| patch_extract | extract patch from a pdb file |
| patchsearch_rmsd | Compute rmsd between X and Y |
| psearch | search for matchings between query pdb and a surface pdb... |
| read_surface | read PDB file containing an extracted protein surface or... |
| rmsd | Compute RMSD between matrices of coordinates X and Y |
| surf_extract | extract a surface from a pdb file given a list of chains |
| surf_type | type atoms on a surface in a pdb file |
| vertexc | Constructs vertex table V |
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