intcal.data: plot the IntCal20 data

View source: R/data.R

intcal.dataR Documentation

plot the IntCal20 data

Description

plot the C14 ages underpinning the IntCal20/Marine20/SHCal20 calibration curves

Usage

intcal.data(
  cal1,
  cal2,
  cc1 = "IntCal20",
  cc2 = NA,
  calcurve.data = "IntCal20",
  select.sets = c(),
  BCAD = FALSE,
  cal.lab = NA,
  cal.rev = FALSE,
  c14.lab = NA,
  c14.lim = NA,
  c14.rev = FALSE,
  ka = FALSE,
  cc1.col = rgb(0, 0, 1, 0.5),
  cc1.fill = rgb(0, 0, 1, 0.2),
  cc2.col = rgb(0, 0.5, 0, 0.5),
  cc2.fill = rgb(0, 0.5, 0, 0.2),
  data.cols = c(),
  data.pch = c(1, 2, 5, 6, 15:19),
  pch.cex = 0.5,
  legend.loc = "topleft",
  legend.ncol = 2,
  legend.cex = 0.7,
  cc.legend = "bottomright",
  bty = "l",
  ...
)

Arguments

cal1

First calendar year for the plot

cal2

Last calendar year for the plot

cc1

Name of the calibration curve. Can be "IntCal20", "Marine20", "SHCal20", or for the previous curves "IntCal13", "Marine13" or "SHCal13".

cc2

Optional second calibration curve to plot. Can be "IntCal20", "Marine20", "SHCal20", or for the previous curves "IntCal13", "Marine13" or "SHCal13". Defaults to nothing, NA.

calcurve.data

Which dataset to use. Defaults to calcurve.data="IntCal20", but can also be calcurve.data="SHCal20". Note that Marine20 is based on IntCal20 and a marine carbon cycle model.

select.sets

Which datasets to plot. Defaults to all datasets within the selected period.

BCAD

The calendar scale of graphs and age output-files is in cal BP (calendar or calibrated years before the present, where the present is AD 1950) by default, but can be changed to BC/AD using BCAD=TRUE.

cal.lab

The labels for the calendar axis (default age.lab="cal BP" or "BC/AD" if BCAD=TRUE), or to age.lab="kcal BP" etc. if ka=TRUE.

cal.rev

Reverse the calendar axis.

c14.lab

Label for the C-14 axis. Defaults to 14C BP (or 14C kBP if ka=TRUE).

c14.lim

Axis limits for the C-14 axis. Calculated automatically by default.

c14.rev

Reverse the C-14 axis.

ka

Use kcal BP (and C14 kBP).

cc1.col

Colour of the calibration curve (outline).

cc1.fill

Colour of the calibration curve (fill).

cc2.col

Colour of the calibration curve (outline), if activated (default cc2=NA).

cc2.fill

Colour of the calibration curve (fill), if activated (default cc2=NA).

data.cols

colours of the data points. Defaults to R's colours 1 to 8 (black, red, green, darkblue, lightblue, purple, orange, and grey)

data.pch

Symbols of the data points. Defaults to R's symbols 1, 2, 5, 6, and 15 to 19 (open circle, open upward triangle, open diamond, open downward triangle, closed square, closed circle, closed upward triangle, closed diamond)

pch.cex

Size of the data symbols. Defaults to 0.5.

legend.loc

Location of the data legend. Defaults to topleft. Set to NA for no plotting.

legend.ncol

Number of columns of the data legend.

legend.cex

Size of the legend. Defaults to 0.7.

cc.legend

Location of the legend for the calibration curve(s).

bty

Box type around the plot. Defaults to "l"-shaped.

...

Any additional optional plotting parameters.

Details

These datasets were downloaded from Intcal.org. All data have both uncertainties in C14 age and on the calendar scale. For trees this is the sample thickness (e.g., 10 years or 1 year). The name of each dataset starts with a lower-case letter which indicates their nature (t = tree-rings, l = lake sediment, c = coral, m = marine sediment, s = speleothem), followed by either the radiocarbon laboratory's placename or the lastname of the main author. Most of the tree-ring datasets are dated at calendar year precision; tSeattle (references 1-2), tBelfast (3-5), tWaikato (4-7), tGroningen (8-10), tHeidelberg (11-14), tPretoria (16), tIrvine (17-20), tGalimberti (21), tMannheim (22-25), tAix (26-27), tAarhus (22, 28-30), tManningKromer (31-32), tVienna (33-34), tTokyo (35-39), tArizona (40), tMiyake (41), tPearson (22, 41-45), and tZurich (22-23, 25, 41, 43, 46-49). Horizontal error bars for these series indicate the numbers of rings in the samples (e.g., 10 tree-rings; 1-yr samples do not have error bars). Additionally, there are some floating tree-ring datasets with imprecisely known calendar ages; tAdolphy (50) and tTurney (51-52). For these and the following datasets, horizontal error bars indicate their 1 sd calendar age uncertainties. Beside trees, other datasets include lake sediment (lSuigestu, 53-54), corals (cBard 55-56, cFairbanks 57, cCutler 58 and cDurand 61, marine sediment (mCariaco 59-60, 62-63, mBard 64-65) and speleothems (sSouthon 66-67, sHoffman 68, sBeck 69). The southern hemisphere calibration curve SHCal20 is mostly modelled on IntCal20, but it contains datasets from the southern hemisphere; tPretoria (70), tWaikato (72-75), tBelfast (76-67), tSydney (78-80), tLivermore (81), tArizona, tIrvineWaikato and tZurich (82-83).

Value

A plot of the IntCal curve and the underlying data, as well as (invisibly) the data themselves

References

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[41] Miyake F., Jull A.J.T., Panyushkina I.P., Wacker L., Salzer M., Baisan C., Lange T., Cruz R., Masuda K., Nakamura T. 2017. Large 14C excursion in 5480 BC indicates an abnormal sun in the mid-Holocene. PNAS Physical Sciences - Earth, Atmospheric, and Planetary Sciences 114 (3), doi:10.1073/pnas.161314411

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[49] Bayliss et al. in prep

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[54] Gordon Schlolaut, Richard A Staff, Michael H Marshall, Achim Brauer, Christopher Bronk Ramsey, Henry F Lamb, Takeshi Nakagawa, 2018, An extended and revised Lake Suigetsu varve chronology from ~50 to ~10 ka BP based on detailed sediment micro-facies analyses, Quaternary Science Reviews 200, 351-366

[55] Bard, E, Hamelin, B, Fairbanks, RG, Zindler, A. 1990. Calibration of the 14C timescale over the past 30,000 years using mass spectrometric U-Th ages from Barbados corals. Nature 345: 405-410.

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[58] Cutler, KB, Gray, SC, Burr, GS, Edwards, RL, Taylor, FW, Cabioch, G, Beck, JW, Cheng, H, and Moore, J. 2004. Radiocarbon calibration to 50 kyr BP with paired 14C and 230Th dating of corals from Vanuatu and Papua New Guinea. Radiocarbon 46: 1127-1160.

[59] Hughen, KA, Southon, JR, Lehman, SJ, Overpeck, JT, 2000. Synchronous radiocarbon and climate shifts during the last deglaciation. Science 290, 1951-1954.

[60] Hughen, KA, Southon, JR, Bertrand, CJH, Frantz, B, Zermeno, P. 2004. Cariaco Basin calibration update: revisions to calendar and 14C chronologies for core PL07-58PC. Radiocarbon 46: 1161-1187.

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[63] Hughen, K, Heaton, TJ. Updated Cariaco Basin 14C Calibration Dataset from 0-60k BP, in prep

[64] Bard, E, Rostek, F, Menot-Combes, G, 2004. Radiocarbon calibration beyond 20,000 14C yr B.P. by means of planktonic foraminifera of the Iberian Margin. Quaternary Research 61, 204-214.

[65] Edouard Bard, Guillemette Menot, Frauke Rostek, Laetitia Licari, Philipp Boening,R Lawrence Edwards, Hai Cheng, Yongjin Wang, Timothy J Heaton, (2013) 'Radiocarbon calibration/comparison records based on marine sediments from the Pakistan and Iberian margins', Radiocarbon, Vol 55, Nr 4, 2013, p 1999-2019

[66] Southon J, Noronha AL, Cheng H, Edwards RL, Wang YJ. (2012). A high-resolution record of atmospheric C-14 based on Hulu Cave speleothem H82. Quaternary Science Reviews 33:32-41

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[68] Dirk L. Hoffmann, J. Warren Beck, David A. Richards, Peter L. Smart, Joy S. Singarayer, Tricia Ketchmark, Chris J. Hawkesworth. 2010. Towards radiocarbon calibration beyond 28 ka using speleothems from the Bahamas,Earth and Planetary Science Letters,289:1-10.

[69] J. Warren Beck, David A. Richards, R. Lawrence Edwards, Bernard W. Silverman, Peter L. Smart, Douglas J. Donahue, Sofia Hererra-Osterheld, George. S. Burr, Leal Calsoyas, A. J. Timothy Jull, Dana Biddulph. 2001. Extremely Large Variations of Atmospheric 14C Concentration During the Last Glacial Period Science 292:2453

[70] Vogel et al. 1993. Pretoria calibration curve for short-lived samples, 1930-3350 BC. Radiocarbon 35: 73-85.

[71] Stuiver, Braziunas 1998. Anthropogenic and solar components of hemispheric 14C. Geophysical Research Letters 25: 329-332.

[72] Hogg et al. 2002 High-precision radiocarbon measurements of contemporaneous tree-ring dated wood from the British Isles and New Zealand: AD 1850-950. Radiocarbon 44: 633-640.

[73] McCormac et al. 1998. Temporal variation in the interhemispheric C-14 offset. Geophysical Research Letters 25: 1321-1324.

[74] Hogg et al. 2011 High-precision radiocarbon measurements of tree-ring dated wood from New Zealand: 195 BC-AD 995. Radiocarbon 53, 3: 529-542.

[75] Hogg et al. 2013 Is there any evidence for regional 14C offsets in the Southern Hemisphere? \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2458/azu_js_rc.v55i2.16104")}

[76] Hogg et al. 2002 High-precision radiocarbon measurements of contemporaneous tree-ring dated wood from the British Isles and New Zealand: AD 1850-950. Radiocarbon 44: 633-640.

[77] McCormac et al. 1998. Temporal variation in the interhemispheric C-14 offset. Geophysical Research Letters 25: 1321-1324.

[78] Hua et al. 2009 Atmospheric 14C variations derived from tree rings during the early Younger Dryas. Quaternary Science Reviews, v. 28, 25-26: 2982-2990.

[79] Hua et al. 2004 Radiocarbon in tropical tree rings during the Little Ice Age. Nuclear Instruments and Methods in Physics Research B 223-224:489-94.

[80] Hogg et al. 2013 SHCal13 Southern Hemisphere calibration, 0-50,000 cal yr BP. Radiocarbon 55, 2

[81] Zimmerman et al. 2010 Extension of the Southern Hemisphere atmospheric radiocarbon curve, 2120-850 years BP: results from Tasmanian huon pine. Radiocarbon 52, 203: 887-94.

[82] Boentgen et al. 2018 Tree rings reveal globally coherent signature of cosmogenic radiocarbon events in 774 and 993 CE. Nature Communications, 9: 3605. doi:10.1038/s41467-018-06036-0. [83] Sookdeo et al. 2020 Quality Dating: A well-defined protocol implemented at ETH Zurich for high-precision 14C dates tested on Late Glacial wood. Radiocarbon. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1017/RDC.2019.132")}

Examples

  intcal.data(100, 200)
  intcal.data(40e3, 55e3, ka=TRUE)
  # plot Suigetsu and Cariaco data only
  dat <- intcal.data(20e3, 25e3)
  unique(dat$set) # ordered against their appearance in the plot's legend
  dat <- intcal.data(20e3, 25e3, selectsets=c(109, 120), data.cols=c(1,2))

Maarten14C/IntCal documentation built on Oct. 11, 2023, 1:25 a.m.