Files in MacCampbell/swainysmoother
A Method for Identifying High Fst Genomic Regions
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/BasicPopGenStatistics.R
R/compile_parallel_and_compute_observed.R
R/locateIslands.R
R/multiChromoFigure-11-20.R
R/multiChromoFigure-21-29.R
R/multiChromoFigure.R
R/multiChromoFigure.R~
R/multiChromoFigureOmy05.R
R/perm_parallel.R
R/retrieveHighFstSnps.R
R/rscript_omy05.R
R/swainyEntryMaker.R
R/swainyPrepper2.R
R/swainyPrepperWGS.R
R/swthFunc.R
README.md
bashScripts/dev2.sh
bashScripts/driveSwainySmoother.sh
bashScripts/driveSwainySmootherWGS.sh
bashScripts/make_R_scripts.sh
bashScripts/processPileup.sh
exampleData/M021514_M209_1G.dat
exampleData/M021516_M209_2A.dat
exampleData/M021644_M210_6A.dat
exampleData/M021646_M210_6C.dat
exampleData/PermAndObs_10.rda
exampleData/RT.Chrom.Lengths
exampleData/allDat/M021514_M209_1G.dat
exampleData/allDat/M021516_M209_2A.dat
exampleData/allDat/M021518_M209_2C.dat
exampleData/allDat/M021522_M209_2G.dat
exampleData/allDat/M021523_M209_2H.dat
exampleData/allDat/M021524_M209_3A.dat
exampleData/allDat/M021525_M209_3B.dat
exampleData/allDat/M021527_M209_3D.dat
exampleData/allDat/M021533_M209_4B.dat
exampleData/allDat/M021540_M209_5A.dat
exampleData/allDat/M021544_M209_5E.dat
exampleData/allDat/M021548_M209_6A.dat
exampleData/allDat/M021549_M209_6B.dat
exampleData/allDat/M021553_M209_6F.dat
exampleData/allDat/M021606_M210_1C.dat
exampleData/allDat/M021607_M210_1D.dat
exampleData/allDat/M021617_M210_2F.dat
exampleData/allDat/M021626_M210_3G.dat
exampleData/allDat/M021627_M210_3H.dat
exampleData/allDat/M021628_M210_4A.dat
exampleData/allDat/M021630_M210_4C.dat
exampleData/allDat/M021631_M210_4D.dat
exampleData/allDat/M021638_M210_5C.dat
exampleData/allDat/M021639_M210_5D.dat
exampleData/allDat/M021644_M210_6A.dat
exampleData/allDat/M021646_M210_6C.dat
exampleData/coveragePlot.pdf
exampleData/out.bak
exampleData/out.geno
exampleData/out/SNP_and_Contig_Stats.rda
exampleData/out/chr_omy01_quants_10.rda
exampleData/out/chr_omy02_quants_10.rda
exampleData/out/chr_omy03_quants_10.rda
exampleData/out/chr_omy04_quants_10.rda
exampleData/out/chr_omy05_quants_10.rda
exampleData/out/chr_omy06_quants_10.rda
exampleData/out/chr_omy07_quants_10.rda
exampleData/out/chr_omy08_quants_10.rda
exampleData/out/chr_omy09_quants_10.rda
exampleData/out/chr_omy10_quants_10.rda
exampleData/out/chr_omy11_quants_10.rda
exampleData/out/chr_omy12_quants_10.rda
exampleData/out/chr_omy13_quants_10.rda
exampleData/out/chr_omy14_quants_10.rda
exampleData/out/chr_omy15_quants_10.rda
exampleData/out/chr_omy16_quants_10.rda
exampleData/out/chr_omy17_quants_10.rda
exampleData/out/chr_omy18_quants_10.rda
exampleData/out/chr_omy19_quants_10.rda
exampleData/out/chr_omy20_quants_10.rda
exampleData/out/chr_omy21_quants_10.rda
exampleData/out/chr_omy22_quants_10.rda
exampleData/out/chr_omy23_quants_10.rda
exampleData/out/chr_omy24_quants_10.rda
exampleData/out/chr_omy25_quants_10.rda
exampleData/out/chr_omy26_quants_10.rda
exampleData/out/chr_omy27_quants_10.rda
exampleData/out/chr_omy28_quants_10.rda
exampleData/out/chr_omy29_quants_10.rda
exampleData/out/comms4parallel.txt
exampleData/out/convertedData.txt
exampleData/out/data.rda
exampleData/out/rscript_omy01.R
exampleData/out/rscript_omy01.Rout
exampleData/out/rscript_omy02.R
exampleData/out/rscript_omy02.Rout
exampleData/out/rscript_omy03.R
exampleData/out/rscript_omy03.Rout
exampleData/out/rscript_omy04.R
exampleData/out/rscript_omy04.Rout
exampleData/out/rscript_omy05.R
exampleData/out/rscript_omy05.Rout
exampleData/out/rscript_omy06.R
exampleData/out/rscript_omy06.Rout
exampleData/out/rscript_omy07.R
exampleData/out/rscript_omy07.Rout
exampleData/out/rscript_omy08.R
exampleData/out/rscript_omy08.Rout
exampleData/out/rscript_omy09.R
exampleData/out/rscript_omy09.Rout
exampleData/out/rscript_omy10.R
exampleData/out/rscript_omy10.Rout
exampleData/out/rscript_omy11.R
exampleData/out/rscript_omy11.Rout
exampleData/out/rscript_omy12.R
exampleData/out/rscript_omy12.Rout
exampleData/out/rscript_omy13.R
exampleData/out/rscript_omy13.Rout
exampleData/out/rscript_omy14.R
exampleData/out/rscript_omy14.Rout
exampleData/out/rscript_omy15.R
exampleData/out/rscript_omy15.Rout
exampleData/out/rscript_omy16.R
exampleData/out/rscript_omy16.Rout
exampleData/out/rscript_omy17.R
exampleData/out/rscript_omy17.Rout
exampleData/out/rscript_omy18.R
exampleData/out/rscript_omy18.Rout
exampleData/out/rscript_omy19.R
exampleData/out/rscript_omy19.Rout
exampleData/out/rscript_omy20.R
exampleData/out/rscript_omy20.Rout
exampleData/out/rscript_omy21.R
exampleData/out/rscript_omy21.Rout
exampleData/out/rscript_omy22.R
exampleData/out/rscript_omy22.Rout
exampleData/out/rscript_omy23.R
exampleData/out/rscript_omy23.Rout
exampleData/out/rscript_omy24.R
exampleData/out/rscript_omy24.Rout
exampleData/out/rscript_omy25.R
exampleData/out/rscript_omy25.Rout
exampleData/out/rscript_omy26.R
exampleData/out/rscript_omy26.Rout
exampleData/out/rscript_omy27.R
exampleData/out/rscript_omy27.Rout
exampleData/out/rscript_omy28.R
exampleData/out/rscript_omy28.Rout
exampleData/out/rscript_omy29.R
exampleData/out/rscript_omy29.Rout
exampleWGS/evaluateDat.R
exampleWGS/evaluateDat5x.R
exampleWGS/evaluateDatRadSeq.R
exampleWGS/processPileup5x.sh
exampleWGS/sub.R
exampleWGS/subDat.sh
man/hello.Rd
src/wksmooth.c
src/wksmooth.o
src/wksmooth.so
swainysmoother.Rproj
