getField_ICOS: Get a Field for ICOS

In MagicForrest/DGVMBenchmarks: Benchmarking functionality for DGVMs/LSMs built on DGVMTools.

Get a Field for ICOS

Description

An internal function that reads data from ICOS observations.

Usage

getField_ICOS(
  source,
  quant,
  layers = NULL,
  target.STAInfo,
  file.name,
  verbose,
  UT.threshold = "VUT",
  method = "REF",
  day.night.method = "NT",
  NEE.day.night = NULL,
  first.year,
  last.year,
  rm.leap = TRUE,
  data.cleaning = TRUE,
  qc.threshold = 0.5,
  ...
)

Arguments

source	A Source containing the meta-data about the ICOS observations
quant	A Quantity object to define what quantity from the ICOS observations to extract
layers	Ignored for ICOS
target.STAInfo	The spatial-temporal target domain
file.name	Character string holding the name of the file. This can be left blank, in which case the file name is just taken to be "[e-mail]" (also "[e-mail]")
verbose	A logical, set to true to give progress/debug information
UT.threshold	USTAR threshold, variable (VUT) or constant (CUT). VUT is default
method	Method, e.g. REF, USTAR50, MEAN. REF is default
day.night.method	Nighttime (NT) or daytime (DT) partition method for GPP and Reco. Default is NT
NEE.day.night	Set to DAY or NIGHT for only daytime or nighttime NEE. Default is NULL
first.year	Optional, will exclude data before this year
last.year	Optional, will exclude data beyond this year
rm.leap	A logical, set to true to remove leap days
data.cleaning	A logical, set to true to apply data cleaning
qc.threshold	Optional, set to a value between 0 and 1 below which data will be set to NA. Default is 0.5. Set to NULL to omit this from data cleaning

Value

A list containing firstly the data.table containing the data, and secondly the STA.info

Author(s)

Margot Knapen [e-mail]

MagicForrest/DGVMBenchmarks documentation built on April 14, 2025, 5:31 a.m.