Files in MahShaaban/aacna
Analysis Compendium of the Autophagy and AMPK Co-expression
.Rbuildignore
.Rhistory
.gitmodules
.travis.yml
DESCRIPTION
NAMESPACE
R/aacna.R
R/functions.R
README.md
aacna.Rproj
analysis/Makefile
analysis/scripts/01.analysis.R
analysis/scripts/figures/differentiation_markers.R
analysis/scripts/figures/expression_averages.R
analysis/scripts/figures/expression_averages_all.R
analysis/scripts/figures/gene_membership.R
analysis/scripts/figures/module_cor_overrep.R
analysis/scripts/figures/module_networks.R
analysis/scripts/figures/overrep_by_modules.R
analysis/scripts/figures/preservation_ranks.R
analysis/scripts/figures/preservation_zsummary.R
analysis/scripts/figures/qc_eda.R
analysis/scripts/figures/rtqpcr.R
analysis/scripts/figures/sft_power.R
analysis/scripts/figures/similarity_centrality.R
analysis/scripts/figures/workflow.dot
analysis/scripts/tables/datasets.R
analysis/scripts/tables/go_genes.R
analysis/scripts/tables/module_interactions.R
analysis/scripts/tables/module_interactions_term.R
analysis/scripts/tables/module_members.R
analysis/scripts/tables/network_hubs.R
analysis/scripts/tables/rtqpcr_primers.R
analysis/scripts/tables/time_points.R
codecov.yml
docker/Dockerfile
man/aacna.Rd
man/annotation_get.Rd
man/cna_run.Rd
man/expression_get.Rd
man/expression_reshape.Rd
man/expression_subset.Rd
man/interactions_get.Rd
man/member_importance.Rd
man/member_similarity.Rd
man/metadata_get.Rd
man/module_compare.Rd
man/module_network.Rd
tests/testthat.R
tests/testthat/test-functions.R
