Man pages for MalteThodberg/BEEF
Batch Effect Estimation with fSVA (Frozen Surrogate Variable Analysis)
| batch4class2 | example data |
| beefedUpKNN | fSVA and k-Nearest Neighbor classifier |
| beefedUpSNC | fSVA and Nearest Shrunken Centroid classifier |
| caretKNN | fSVA and k Nearest Neighbor caret-package custom model. |
| caretSNC | fSVA and Nearest Shrunken Centroid caret-package custom... |
| featureImportance | fSVA and Nearest Shrunken Centroid feature importance |
| fitSVA | Surrogate Variable Analysis (SVA) wrapper for prediction |
| hackedSVA | Fast Surrogate Variable Analysis |
| knn4 | k-Nearest Neighbor classifier with multiple k |
| plot.beefedUpSNC | Plot batch-corrected centroids |
| predict.beefedUpKNN | fSVA and k-Nearest Neighbor prediction |
| predict.beefedUpSNC | fSVA and Nearest Shrunken Centroid prediction |
| predict.fitSVA | Frozen SVA (fSVA) wrapper for prediction |
