fitSVA: Surrogate Variable Analysis (SVA) wrapper for prediction

In MalteThodberg/BEEF: Batch Effect Estimation with fSVA (Frozen Surrogate Variable Analysis)

Description

Wraps the smartsva and fsva functions into a standard set of fit and predict functions.

Usage

fitSVA(x, y, n.sv, ...)

Arguments

x	matrix: Normalized and log-transformed expression values (samples in rows, features in columns).
y	factor: Class labels.
n.sv	integer: Number of surrogate variables to estimate.
...	additional arguments passed to smartsva.

Value

fitSVA object (With the following components...)

Examples

# ADD_EXAMPLES_HERE

MalteThodberg/BEEF documentation built on May 7, 2019, 2:09 p.m.