R/dataset_documentation.R

In MalteThodberg/Shenzen2016: Datasets for Introduction to Advanced Topics in Bioinformatics 2016

#' Pasilla knock down experiment
#'
#' RNA-Seq data originally from bioconductor. For more information, see reference from URL.
#'
#' @format List with 3 elements:
#' \describe{
#'   \item{Expression}{Integer matrix: Features by samples matrix with integers representing raw counts}
#'   \item{Design}{Dataframe: Study design}
#'   \item{Annotation}{Dataframe: Additional info about features}
#'   The three objects are already in the same order, but can be matched using row/column names.
#' }
#' @source \url{https://www.bioconductor.org/packages/release/data/experiment/html/pasilla.html}
"pasilla"

#' Fission yeast mutant time series experiment
#'
#' RNA-Seq data originally from bioconductor. For more information, see reference from URL.
#'
#' @format List with 3 elements:
#' \describe{
#'   \item{Expression}{Integer matrix: Features by samples matrix with integers representing raw counts}
#'   \item{Design}{Dataframe: Study design}
#'   \item{Annotation}{Dataframe: Additional info about features}
#'   The three objects are already in the same order, but can be matched using row/column names.
#' }
#' @source \url{http://www.bioconductor.org/packages/release/data/experiment/html/fission.html}
"yeast"

#' Zebrafish gallein experiment
#'
#' RNA-Seq data originally from bioconductor. For more information, see reference from URL.
#'
#' @format List with 3 elements:
#' \describe{
#'   \item{Expression}{Integer matrix: Features by samples matrix with integers representing raw counts}
#'   \item{Design}{Dataframe: Study design}
#'   \item{Annotation}{Dataframe: Additional info about features}
#'   The three objects are already in the same order, but can be matched using row/column names.
#' }
#' @source \url{http://www.bioconductor.org/packages/release/data/experiment/html/zebrafishRNASeq.html}
"zebrafish"

#' Human Tissue Experiment (Wang et al.)
#'
#' RNA-Seq data originally from RECount. For more information, see reference from URL.
#'
#' @format List with 3 elements:
#' \describe{
#'   \item{Expression}{Integer matrix: Features by samples matrix with integers representing raw counts}
#'   \item{Design}{Dataframe: Study design}
#'   \item{Annotation}{Dataframe: Additional info about features}
#'   The three objects are already in the same order, but can be matched using row/column names.
#' }
#' @source \url{http://www.ncbi.nlm.nih.gov/pubmed?term=18978772}
"tissues"