Files in Mamie/scDNAmClock
Epigenetic clock on scMethyl-seq data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/SVT.R
R/class.R
R/clock.R
R/methods.R
R/preprocess_functions.R
R/sysdata.rda
R/tsvd.R
R/utils.R
README.md
data-raw/1_extract_data.R
data-raw/1_sample_information.R
data-raw/2_intraclass_correlation.R
data-raw/2_preprocess_meth.R
data-raw/3_missingness.R
data-raw/3_modeling.R
data-raw/4_debug.m
data-raw/4_pheno_age.R
data-raw/5_retrain_phenoAge.R
data-raw/6_simulation.R
data-raw/7_hyperparameter_tuning.R
data-raw/8_FHS.R
data-raw/8_M_vs_beta_values.R
data-raw/8_SVTR.R
data-raw/9_meta_analysis.R
data-raw/9_testing.R
data-raw/Caclulation_DNAmPhenoAge.RData
data-raw/DNAmPhenoAge_Calculation.R
data-raw/NewPhenoAge_SVD.R
data-raw/create_bsseq_obj.R
data-raw/noise_model.stan
data-raw/preprocess_glass2017_adelman2019.R
data-raw/rn6_to_mm10.R
inst/extdata/mm9ToMm10.over.chain
man/PhenoAge.Rd
man/SVT_denoise.Rd
man/as_GRanges-methods.Rd
man/as_df-methods.Rd
man/choose_k.Rd
man/filter_sites-methods.Rd
man/join_meth_list.Rd
man/map_coord-methods.Rd
man/methCall-class.Rd
man/n_row-methods.Rd
man/plot_coverage.Rd
man/read_meth.Rd
man/tidy_coef.Rd
scDNAmClock.Rproj
tests/testthat.R
tests/testthat/test-lift_over.R
vignettes/.gitignore
vignettes/introduction.Rmd
