r_bg: Evaluate an expression in another R session, in the...

In MangoTheCat/callr: Call R from R

Evaluate an expression in another R session, in the background

Description

Starts evaluating an R function call in a background R process, and returns immediately. Use p$get_result() to collect the result or to throw an error if the background computation failed.

Usage

r_bg(
  func,
  args = list(),
  libpath = .libPaths(),
  repos = default_repos(),
  stdout = "|",
  stderr = "|",
  poll_connection = TRUE,
  error = getOption("callr.error", "error"),
  cmdargs = c("--slave", "--no-save", "--no-restore"),
  system_profile = FALSE,
  user_profile = "project",
  env = rcmd_safe_env(),
  supervise = FALSE,
  package = FALSE,
  arch = "same",
  ...
)

Arguments

func	Function object to call in the new R process. The function should be self-contained and only refer to other functions and use variables explicitly from other packages using the :: notation. By default the environment of the function is set to .GlobalEnv before passing it to the child process. (See the package option if you want to keep the environment.) Because of this, it is good practice to create an anonymous function and pass that to callr, instead of passing a function object from a (base or other) package. In particular r(.libPaths) does not work, because .libPaths is defined in a special environment, but r(function() .libPaths()) works just fine.
args	Arguments to pass to the function. Must be a list.
libpath	The library path.
repos	The repos option. If NULL, then no repos option is set. This options is only used if user_profile or system_profile is set FALSE, as it is set using the system or the user profile.
stdout	The name of the file the standard output of the child R process will be written to. If the child process runs with the --slave option (the default), then the commands are not echoed and will not be shown in the standard output. Also note that you need to call print() explicitly to show the output of the command(s). IF NULL, then standard output is not returned, but it is recorded and included in the error object if an error happens. Various special values for this argument such as "|" are explained in the stdout argument of processx::process.
stderr	The name of the file the standard error of the child R process will be written to. In particular message() sends output to the standard error. If nothing was sent to the standard error, then this file will be empty. This argument can be the same file as stdout, in which case they will be correctly interleaved. If this is the string "2>&1", then standard error is redirected to standard output. IF NULL, then standard output is not returned, but it is recorded and included in the error object if an error happens. Various special values for this argument such as "|" are explained in the stdout argument of processx::process.
poll_connection	Whether to have a control connection to the process. This is used to transmit messages from the subprocess to the main process.
error	What to do if the remote process throws an error. See details below.
cmdargs	Command line arguments to pass to the R process. Note that c("-f", rscript) is appended to this, rscript is the name of the script file to run. This contains a call to the supplied function and some error handling code.
system_profile	Whether to use the system profile file.
user_profile	Whether to use the user's profile file. If this is "project", then only the profile from the working directory is used, but the R_PROFILE_USER environment variable and the user level profile are not. See also "Security considerations" below.
env	Environment variables to set for the child process.
supervise	Whether to register the process with a supervisor. If TRUE, the supervisor will ensure that the process is killed when the R process exits.
package	Whether to keep the environment of func when passing it to the other package. Possible values are: FALSE: reset the environment to .GlobalEnv. This is the default. TRUE: keep the environment as is. pkg: set the environment to the pkg package namespace.
arch	Architecture to use in the child process, for multi-arch builds of R. By default the same as the main process. See supported_archs(). If it contains a forward or backward slash character, then it is taken as the path to the R executable. Note that on Windows you need the path to Rterm.exe.
...	Extra arguments are passed to the processx::process constructor.

Value

An r_process object, which inherits from process, so all process methods can be called on it, and in addition it also has a get_result() method to collect the result.

Security considerations

callr makes a copy of the user's .Renviron file and potentially of the local or user .Rprofile, in the session temporary directory. Avoid storing sensitive information such as passwords, in your environment file or your profile, otherwise this information will get scattered in various files, at least temporarily, until the subprocess finishes. You can use the keyring package to avoid passwords in plain files.

Examples

rx <- r_bg(function() 1 + 2)

# wait until it is done
rx$wait()
rx$is_alive()
rx$get_result()

MangoTheCat/callr documentation built on Aug. 29, 2024, 2:32 a.m.