.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
COPYING
CRAN-SUBMISSION
DESCRIPTION
NAMESPACE
R/.Rhistory
R/append_agg_nets.R
R/build_metanet.R
R/compute_TL.R
R/compute_dissimilarities.R
R/compute_diversities.R
R/compute_metrics.R
R/diff_plot.R
R/get_layout.R
R/get_legend.R
R/ggmetanet.R
R/meta_angola.R
R/meta_norway.R
R/meta_vrtb.R
R/metanet_build_pipe.R
R/metanet_pipe.R
R/pipe.R
R/plot_trophicTable.R
R/print.R
R/sbmparams.R
R/vismetaNetwork.R
README.Rmd
README.md
README_files/A.gif
README_files/G.gif
README_files/K.gif
README_files/L.gif
README_files/beta.gif
README_files/figure-gfm/unnamed-chunk-1-1.png
README_files/figure-gfm/unnamed-chunk-10-1.png
README_files/figure-gfm/unnamed-chunk-11-1.png
README_files/figure-gfm/unnamed-chunk-12-1.png
README_files/figure-gfm/unnamed-chunk-13-1.png
README_files/figure-gfm/unnamed-chunk-14-1.png
README_files/figure-gfm/unnamed-chunk-15-1.png
README_files/figure-gfm/unnamed-chunk-16-1.png
README_files/figure-gfm/unnamed-chunk-17-1.png
README_files/figure-gfm/unnamed-chunk-18-1.png
README_files/figure-gfm/unnamed-chunk-19-1.png
README_files/figure-gfm/unnamed-chunk-2-1.png
README_files/figure-gfm/unnamed-chunk-20-1.png
README_files/figure-gfm/unnamed-chunk-21-1.png
README_files/figure-gfm/unnamed-chunk-22-1.png
README_files/figure-gfm/unnamed-chunk-23-1.png
README_files/figure-gfm/unnamed-chunk-23-2.png
README_files/figure-gfm/unnamed-chunk-24-1.png
README_files/figure-gfm/unnamed-chunk-25-1.png
README_files/figure-gfm/unnamed-chunk-27-1.png
README_files/figure-gfm/unnamed-chunk-27-2.png
README_files/figure-gfm/unnamed-chunk-28-1.png
README_files/figure-gfm/unnamed-chunk-28-2.png
README_files/figure-gfm/unnamed-chunk-3-1.png
README_files/figure-gfm/unnamed-chunk-4-1.png
README_files/figure-gfm/unnamed-chunk-5-1.png
README_files/figure-gfm/unnamed-chunk-6-1.png
README_files/figure-gfm/unnamed-chunk-9-1.png
README_files/figure-gfm/unnamed-chunk-9-2.png
README_files/figure-gfm/unnamed-chunk-9-3.png
README_files/figure-gfm/unnamed-chunk-9-4.png
README_files/u.gif
_pkgdown.yml
codecov.yml
cran-comments.md
data/meta_angola.rda
data/meta_norway.rda
data/meta_vrtb.rda
inst/WORDLIST
man/TL_tsne.default.Rd
man/append_agg_nets.Rd
man/attach_layout.Rd
man/build_metanet.Rd
man/compute_TL.Rd
man/compute_dis.Rd
man/compute_div.Rd
man/compute_metrics.Rd
man/diff_plot.Rd
man/extract_networks.Rd
man/figures/leaflet-1.png
man/figures/logo_metanetwork.png
man/figures/metanetwork_map.png
man/figures/unnamed-chunk-10-1.png
man/figures/unnamed-chunk-11-1.png
man/figures/unnamed-chunk-12-1.png
man/figures/unnamed-chunk-12-2.png
man/figures/unnamed-chunk-13-1.png
man/figures/unnamed-chunk-13-2.png
man/figures/unnamed-chunk-14-1.png
man/figures/unnamed-chunk-14-2.png
man/figures/unnamed-chunk-15-1.png
man/figures/unnamed-chunk-15-2.png
man/figures/unnamed-chunk-16-1.png
man/figures/unnamed-chunk-17-1.png
man/figures/unnamed-chunk-18-1.png
man/figures/unnamed-chunk-19-1.png
man/figures/unnamed-chunk-21-1.png
man/figures/unnamed-chunk-23-1.png
man/figures/unnamed-chunk-24-1.png
man/figures/unnamed-chunk-25-1.png
man/figures/unnamed-chunk-27-1.png
man/figures/unnamed-chunk-27-2.png
man/figures/unnamed-chunk-28-1.png
man/figures/unnamed-chunk-28-2.png
man/figures/unnamed-chunk-4-1.png
man/figures/unnamed-chunk-5-1.png
man/figures/unnamed-chunk-6-1.png
man/figures/unnamed-chunk-7-1.png
man/figures/unnamed-chunk-8-1.png
man/figures/unnamed-chunk-9-1.png
man/ggmetanet.Rd
man/ggnet.default.Rd
man/group_layout.default.Rd
man/is.metanetwork.Rd
man/meta_angola.Rd
man/meta_norway.Rd
man/meta_vrtb.Rd
man/metanet_build_pipe.Rd
man/metanet_pipe.Rd
man/pipe.Rd
man/plot_trophicTable.Rd
man/print.Rd
man/visNetwork.default.Rd
man/vismetaNetwork.Rd
roxygenise_loc.Rout
tests/testthat.R
tests/testthat/test-append_agg_nets.R
tests/testthat/test-attach_layout.R
tests/testthat/test-build_compute_dis.R
tests/testthat/test-build_compute_div.R
tests/testthat/test-build_compute_metrics.R
tests/testthat/test-build_metanet.R
tests/testthat/test-compute_TL.R
tests/testthat/test-diffplot.R
tests/testthat/test-ggmetanet.R
tests/testthat/test-metanet_pipe.R
tests/testthat/test-plot_trophicTable.R
tests/testthat/test-print.R
tests/testthat/test-vismetaNetwork.R
vignettes/angola.Rmd
vignettes/angola0.Rmd.orig
vignettes/angola0_files/figure-html/angola_attach_layout1-1.png
vignettes/angola0_files/figure-html/angola_attach_layout2-1.png
vignettes/angola0_files/figure-html/angola_diff_plot-1.png
vignettes/angola0_files/figure-html/angola_layout_metaweb-1.png
vignettes/angola0_files/figure-html/angola_layout_metaweb-2.png
vignettes/angola0_files/figure-html/angola_metaweb-1.png
vignettes/angola0_files/figure-html/angola_metaweb_phylum-1.png
vignettes/angola0_files/figure-html/angola_plot_trophicTable-1.png
vignettes/figure/SBM_level-1.png
vignettes/figure/SBM_level_2-1.png
vignettes/figure/TL-tsne_species-1.png
vignettes/figure/angola_attach_layout-1.png
vignettes/figure/angola_attach_layout-2.png
vignettes/figure/angola_attach_layout1-1.png
vignettes/figure/angola_attach_layout2-1.png
vignettes/figure/angola_diff_plot-1.png
vignettes/figure/angola_layout_metaweb-1.png
vignettes/figure/angola_layout_metaweb-2.png
vignettes/figure/angola_metaweb-1.png
vignettes/figure/angola_metaweb_phylum-1.png
vignettes/figure/angola_plot_trophicTable-1.png
vignettes/figure/compo-1.png
vignettes/figure/distrib_TL-1.png
vignettes/figure/distrib_TL-2.png
vignettes/figure/grid-1.png
vignettes/figure/group-layout-1.png
vignettes/figure/group-layout-2.png
vignettes/figure/group-layout2-1.png
vignettes/figure/group-layout2-2.png
vignettes/figure/group_config-1.png
vignettes/figure/mammals-1.png
vignettes/figure/norway_attach_layout-1.png
vignettes/figure/norway_attach_layout-2.png
vignettes/figure/norway_attach_layout2-1.png
vignettes/figure/norway_attach_layout3-1.png
vignettes/figure/norway_diff_plot-1.png
vignettes/figure/norway_diffplot-1.png
vignettes/figure/norway_diffplot_group_layout-1.png
vignettes/figure/norway_metaweb-1.png
vignettes/figure/norway_metaweb_group_TL_tsne-1.png
vignettes/figure/norway_metaweb_trophic_class-1.png
vignettes/figure/norway_plot_trophic_table-1.png
vignettes/figure/pyramid_build-1.png
vignettes/figure/unnamed-chunk-1-1.png
vignettes/figure/unnamed-chunk-10-1.png
vignettes/figure/unnamed-chunk-11-1.png
vignettes/figure/unnamed-chunk-12-1.png
vignettes/figure/unnamed-chunk-13-1.png
vignettes/figure/unnamed-chunk-15-1.png
vignettes/figure/unnamed-chunk-16-1.png
vignettes/figure/unnamed-chunk-17-1.png
vignettes/figure/unnamed-chunk-17-2.png
vignettes/figure/unnamed-chunk-17-3.png
vignettes/figure/unnamed-chunk-17-4.png
vignettes/figure/unnamed-chunk-17-5.png
vignettes/figure/unnamed-chunk-7-1.png
vignettes/figure/unnamed-chunk-8-1.png
vignettes/figure/unnamed-chunk-9-1.png
vignettes/norway.Rmd
vignettes/norway0.Rmd.orig
vignettes/precompile.R
vignettes/pyramid.Rmd
vignettes/pyramid0.Rmd.orig
vignettes/pyramid0_files/figure-html/pyramid_build-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-1-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-10-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-11-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-12-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-13-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-15-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-16-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-17-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-17-2.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-17-3.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-17-4.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-17-5.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-7-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-8-1.png
vignettes/pyramid0_files/figure-html/unnamed-chunk-9-1.png
vignettes/silouhette_metaweb_europe/.Rhistory
vignettes/silouhette_metaweb_europe/10_Mus_spretus.png
vignettes/silouhette_metaweb_europe/11_Buteo_buteo.png
vignettes/silouhette_metaweb_europe/12_Accipiter_nisus.png
vignettes/silouhette_metaweb_europe/13_Chlidonias_niger.png
vignettes/silouhette_metaweb_europe/14_Natrix_natrix.png
vignettes/silouhette_metaweb_europe/15_Meriones_crassus.png
vignettes/silouhette_metaweb_europe/16_Talpa_caeca.png
vignettes/silouhette_metaweb_europe/17_Lynx_lynx.png
vignettes/silouhette_metaweb_europe/18_Falco_columbarius.png
vignettes/silouhette_metaweb_europe/19_Nyctea_scandiaca.png
vignettes/silouhette_metaweb_europe/1_Calonectris_diomedea.png
vignettes/silouhette_metaweb_europe/20_Haematopus_ostralegus.png
vignettes/silouhette_metaweb_europe/21_Ardea_cinerea.png
vignettes/silouhette_metaweb_europe/22_Erinaceus_europaeus.png
vignettes/silouhette_metaweb_europe/23_Asio_otus.png
vignettes/silouhette_metaweb_europe/24_Strix_aluco.png
vignettes/silouhette_metaweb_europe/25_Surnia_ulula.png
vignettes/silouhette_metaweb_europe/26_Corvus_monedula.png
vignettes/silouhette_metaweb_europe/27_Pyrrhocorax_pyrrhocorax.png
vignettes/silouhette_metaweb_europe/28_Stercorarius_skua.png
vignettes/silouhette_metaweb_europe/29_Milvus_milvus.png
vignettes/silouhette_metaweb_europe/2_Scurius_vulgaris.png.png
vignettes/silouhette_metaweb_europe/30_Podarcis_lilfordi.png
vignettes/silouhette_metaweb_europe/31_Discoglossus_montalentii.png
vignettes/silouhette_metaweb_europe/32_Podarcis_bocagei.png
vignettes/silouhette_metaweb_europe/33_Lacerta_viridis.png
vignettes/silouhette_metaweb_europe/34_Phrynocephalus_guttatus.png
vignettes/silouhette_metaweb_europe/35_Tarentola_bischoffi.png
vignettes/silouhette_metaweb_europe/36_Hierophis_gemonensis.png
vignettes/silouhette_metaweb_europe/37_Vipera_aspis.png
vignettes/silouhette_metaweb_europe/38_Vipera_berus.png
vignettes/silouhette_metaweb_europe/39_Mustela_eversmanii.png
vignettes/silouhette_metaweb_europe/3_Larus_argentatus.png
vignettes/silouhette_metaweb_europe/40_Dolichophis_schmidti.png
vignettes/silouhette_metaweb_europe/41_Sus_scrofa.png
vignettes/silouhette_metaweb_europe/42_Canis_lupus.png
vignettes/silouhette_metaweb_europe/43_Felis_silvestris.png
vignettes/silouhette_metaweb_europe/44_Genetta_genetta.png
vignettes/silouhette_metaweb_europe/45_Lanius_excubitor.png
vignettes/silouhette_metaweb_europe/46_Bubo_bubo.png
vignettes/silouhette_metaweb_europe/4_Apus_apus.png
vignettes/silouhette_metaweb_europe/5_Acrocephalus.png
vignettes/silouhette_metaweb_europe/6_Monticola_saxatilis.png
vignettes/silouhette_metaweb_europe/7_Prunella_collaris.png
vignettes/silouhette_metaweb_europe/8_Emberiza_cirlus.png
vignettes/silouhette_metaweb_europe/9_Microtus_arvalis.png
vignettes/silouhette_metaweb_europe/credit_phylopic.csv
vignettes/vertebrates.Rmd
vignettes/vertebrates0.Rmd.orig