SimulationStudy1: Synthetic normalised gene expression data for 20 genes

Description Usage Arguments Details Value Author(s) Examples

View source: R/SimulationStudy1.r

Description

As described in xx paper

Usage

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SimulationStudy1(sEEd = 999, no.ppl= 1000)

Arguments

sEED

Positive integer; denoting the random generator state for number random generation (see ?set.seed).

no.ppl

Positive integer; Number of participants to simulate normalised gene expression data.

Details

First simulation for FSPmix as described in xx.

Value

dat

data.frame object of the 20 simulated gene expressions (columns) for no.ppl (rows). Additional columns include participant identifier and latent classification as group.

plot.ColouredCoded.genes

ggplot object of the density of the 20 features coloured coded into 2 classifications.

plot.WhatFSPmixSees

ggplot object of uncoloured densities of the distributions that FSPmix will categorise into either 'A' or 'B' groups.

Author(s)

Marcela Cespedes

Examples

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op<- SimulationStudy1(sEEd = 487, no.ppl = 1000)

head(op$dat)

# View 20 simulated genes (features) coloured coded into groups 'A' and 'B'
op$plot.ColouredCoded.genes

# View 20 simulated genes (features) densities
op$plot.WhatFSPmixSees

MarcelaCespedes/FSPmix documentation built on May 12, 2020, 5:49 p.m.