partial.relationship-class: (Internal) A reference class calculates partial relationship.

In Marchen/partial.plot: Partial dependence plot for statistical/machine learning models.

(Internal) A reference class calculates partial relationship.

Description

(Internal) A reference class calculates partial relationship.

Fields

data

data.frame to keep calculated partial relationship data.

data.split

a list having splitted data.frame for each group specified in x.names.

settings

class settings.

Methods

calculate.relationship(grid)

Calculate partial relationship.

grid

explanatory variables where predicted values are calculated.

filter.result(prediction)

Remove out-ranged values from result of lsmeans.

This internal function removes predicted values those explanatory variable is out of range of original data used for modeling for each group and returns a resultant data.frame.

prediction

result of lsmeans.

initialize(settings)

Initialize class and calculate partial.relationship data.

settings

pp.settings object having function settings.

partial.relationship.internal()

Calculate partial relationship data internally. Mainly used for machine learning methods.

partial.relationship.lsmeans()

Calculate partial regression lines and intervals.

This function calculates data for regression lines and intervals using lsmeans function and returns a data.frame.

predict.stats(newdata, predict.fun, new.value.grid, index, levels, type)

Calculate prediction in cluster.

newdata

newdata for prediction.

predict.fun

predict function.

new.value.grid

a data.frame having all combination of focal values of partial relationship grid.

index

row index of new.value.grid where predicted values are calculated.

levels

levels of quantiles.

summarize.ref.grid(rg)

Calculate predictions and intervals using lsmeans.

summarize.ref.grid.with.mcmc(lsm)

Calculate predictions and intervals using lsmeans with mcmc.

summarize.ref.grid.without.mcmc(lsm)

Calculate predictions and intervals using lsmeans without mcmc.

Marchen/partial.plot documentation built on Feb. 13, 2025, 4:18 a.m.