Description Usage Arguments Value
Title
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 |
X |
a design matrix of explicatives variables for the linear model |
Y |
a matrix of responses |
type |
the type of models to fit. See details for a description of the different types. |
sepx |
if the type use fused lasso or group lasso on the columns of X it is the character separating the group value to the identifier values. For instance if the names of the columns of X are gene.allele and if we want to group variable that belong to the same gene use sepx=".". |
regressors |
if X is null and we are interested in the association between regressors and reponses in different group this is a matrix of regressors. |
group |
this is a charcater vector containing the different groups. It side must be the number of row of the matrix regressors. It indiciate for each rows in which group it is. |
lambda |
default to null. A numeric vector containing values for the regularisation parameter for lasso and group-lasso penalties. |
lambda1 |
default to null. A numeric vector containing values for the lambda1 parameters (sparsity parmater for the fused lasso penalties). |
lambda2 |
default to null. A numeric vector containing values for the lambda2 parameters (fusion parmater for the fused lasso penalties). |
Sigma_12inv |
a matrix of the square root of the inverse of the covariance matrix of the residuals. ( Use to remoove the dependance that may exist among the responses) |
type_S12_inv |
if Sigma_12inv is null it can be estimated using different type. See details for the differents types available. |
a VariSel object.
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