do_taxize: do_taxize

Description Usage Arguments Author(s) See Also

View source: R/do_taxize.R

Description

This function sends either the scientific or common name of each species off to taxize - ids that are returned are then sent to worrms for verification and alternative sp[elling suggestions]

Usage

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do_taxize(df = NULL, chkField = NULL, logName = logName,
  searchtype = NULL)

Arguments

df

- dataframe with names you want to check against ritis

chkField

- name of the field in the df you want to check

logName

- this is the name of the logfile in the working directory that progress should be appended to.

searchtype

- flag indicating whether scientific or common names should be used checking the services

Author(s)

Mike McMahon, Mike.McMahon@dfo-mpo.gc.ca

See Also

Other speciesCodes: assignDefinitive, cleanPrepareSpecList, do_ritis, do_worrmsAphiaID, do_worrmsTSN, do_worrms, getTaxaIDs


Maritimes/Mar.odissupport documentation built on May 28, 2019, 8:22 a.m.