inst/auxiliary/README.md

In MarkRZucker/TACG: Simulating CNV Data

author: Mark Zucker date: 14 April 2019 title: Auxiliary Material for TACG

Overview

This directory contains a combination of material that performs some of the analyses described in our manuscript.

Analyses

1. chlens.txt is a simple table holding the lengths In base pairs) of human chromosomes. It is based on build [UNKNOWN} and was initialy obtained from [UNKNOWN].
2. makeChlens.R is a script that reads the previous file, converts it to a useful form, and saves it in the sysdata.rda file so it can be used by the package. In particular, it is used by functions that simulate Tumor objects to create realistic segmentation data.
3. generateSimulationSet.R is a script that generates sets of simulated chromosomes and associated data to which segmentation algorithms can be applied, such as those used in our manuscript.
4. loci.rda consists of a set of SNP loci for the simulated chromosomes used in our analysis.

MarkRZucker/TACG documentation built on June 14, 2019, 12:28 p.m.