API for MassDynamics/lfq_processing
Processes Proteomics Files for Quantification.
| Global functions | |
|---|---|
| .onLoad | Source code |
| all_columns_present | Source code |
| assembleComparisonConditionMapping | Man page Source code |
| clean_up_lfq_qc | Source code |
| condition_name_decode_intensity_data | Source code |
| condition_name_decode_intensity_data_tmt | Source code |
| condition_name_decode_quantitative_data | Source code |
| condition_name_encoder | Source code |
| condition_name_encoder_tmt | Source code |
| decodeComparisonConditionMapping | Man page Source code |
| des_tmt_PXD019880 | Man page |
| detect_exp_type | Man page Source code |
| detect_fractions | Source code Source code |
| evidence_txt_reader | Source code |
| example_lfq_her2_targetted_therapy_tables | Man page |
| experiment_design_formatter | Source code |
| experiment_design_reader | Source code |
| generic_mq_table_reader | Source code |
| getDownCondition | Man page Source code |
| getOriginalFromSafe | Man page Source code |
| getUpCondition | Man page Source code |
| get_channel_from_col_data | Source code |
| get_comparisons | Source code |
| get_experiment_from_col_data | Source code |
| get_lfq_intensity_columns | Source code |
| get_names_qc_lfq_all | Man page Source code |
| get_names_qc_lfq_protein_only | Man page Source code |
| get_names_qc_tmt_protein_only | Man page Source code |
| get_protein_viz | Man page Source code |
| get_tmt_intensity_columns | Source code |
| impute_lfq | Man page Source code |
| intensity_cols_to_double | Source code |
| lfq_modificationSpecificPeptides_txt_reader | Source code |
| lfq_peptides_txt_reader | Source code |
| lfq_proteinGroup_txt_formatter | Source code |
| lfq_quant_analysis | Man page Source code |
| lfq_read_data | Source code |
| lfq_transformer | Man page Source code |
| limma_stats_fun | Man page Source code |
| make_id_link_table | Source code |
| match_pattern_name | Source code |
| msms_txt_reader | Source code |
| mygsub | Source code |
| oneProteinReplData | Man page |
| parse_id_columns | Source code |
| phospho_enrichment_quant | Man page Source code |
| phospho_sty_reader | Source code |
| prep_comparison_table | Source code |
| protein_groups_tmt_PXD019880 | Man page |
| protein_quant_runner | Man page Source code |
| remove_fracs_files_from_des | Source code |
| remove_not_annotated_channels | Source code |
| render_separate_qcs | Man page |
| tmt_proteinGroup_txt_reader | Source code |
| tmt_quant_analysis | Source code |
| tmt_transformer | Man page Source code |
| verify_tmt_des | Source code |
| writeReplicateData | Man page Source code |
| write_output | Man page Source code |
| write_protein_viz | Source code |
