MathieuEmily/SMILE: Detecting subpopulation under selection in a genomic region

The aim of this package is to propose an implementation of the SMILE statistical method. Such a method aims at detecting subpopulation(s) (breed for example) under selection. Based on the haplotype data in a given genomic region, the method computes the d2s dissimilarity and performs a hierarchical clustering to extract the subpopulation under selection.

Getting started

Package details

AuthorMathieu Emily
MaintainerMathieu Emily <[email protected]>
LicenseGPL (>= 2)
Version0.99.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("MathieuEmily/SMILE")
MathieuEmily/SMILE documentation built on May 9, 2017, 10:08 a.m.