ggboxplot: Boxplot of visualizing different impacts between proteins and...
In Mathlida/comPath: Integrating proteomic and phosphoproteomic data for pathway analysis
Description
Usage
Arguments
Details
Author(s)
See Also
Examples
Description
A function to plot boxplot which visualzes the different impacts between proteins and phosphoproteins on a disturbed pathway.
Usage
1
ggboxplot(pathdata,pathname)
Arguments
pathdata
A matrix. Each row represents protein or phosphoprotein included the pathway, and columns represent their fold change of protein and phosphoprotein respectively. If the protein or phosphoprotedoes not express, the value will be filled with "NA".
pathname
KEGG ID of the pathtway
Details
If the impacts between protome and phosphoproteome on a disturbed pathway are different, the function will be called. Users will get The boxplot of the z-scored fold change of protein and phosphoprotein expression included in the pathway. The outliers of proteins or phosphoproteins will be labeled with Entrez gene ID.
Author(s)
Jie Ren, Jing Li
See Also
help(geom_boxplot)
Examples
1
ggboxplot(pathdata,pathname)
Mathlida/comPath documentation built on May 23, 2019, 5:03 p.m.
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Description Usage Arguments Details Author(s) See Also Examples
Description
A function to plot boxplot which visualzes the different impacts between proteins and phosphoproteins on a disturbed pathway.
Usage
1 | ggboxplot(pathdata,pathname)
|
Arguments
pathdata |
A matrix. Each row represents protein or phosphoprotein included the pathway, and columns represent their fold change of protein and phosphoprotein respectively. If the protein or phosphoprotedoes not express, the value will be filled with "NA". |
pathname |
KEGG ID of the pathtway |
Details
If the impacts between protome and phosphoproteome on a disturbed pathway are different, the function will be called. Users will get The boxplot of the z-scored fold change of protein and phosphoprotein expression included in the pathway. The outliers of proteins or phosphoproteins will be labeled with Entrez gene ID.
Author(s)
Jie Ren, Jing Li
See Also
help(geom_boxplot)
Examples
1 | ggboxplot(pathdata,pathname)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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