process_growth_curve: Process growth curves to viability values

In MathurinD/drugResistance: Process growth curves from drug sensitivity experiments

Process growth curves to viability values

Description

Extract growth rate, normalise and averages growth curves from the experiment

Usage

process_growth_curve(
  experiment,
  keep_controls = TRUE,
  max_confluency = 75,
  space = log
)

Arguments

experiment	Dataset as return by read_incu from incucyter
keep_controls	Whether the controls should be present in the output. Control values are DMSO, medium and no_cells.
max_confluency	The maximum value to consider valid. Used to remove data points when the growth tappers out because of contact inhibition. Adjust according to your data type.
space	A function to modify the fitting space (log (default), identity, etc)

Value

A tibble with new columns Inhibitor, Concentration and Viability

MathurinD/drugResistance documentation built on July 4, 2025, 10:30 p.m.