API for Matteo-Ciciani/scudo
Signature-based Clustering for Diagnostic Purposes

Global functions
.addColors Source code
.checkParams Source code
.classifyInputCheck Source code
.computeCompleteScores Source code
.computeES Source code
.computeFC Source code
.computeScores Source code
.computeSignature Source code
.computeTestNetwork Source code
.defaultDist Source code
.featureSelection Source code
.getScores Source code
.inputCheck Source code
.inputConverter Source code
.isSingleLogical Source code
.isSinglePositiveInteger Source code
.isSinglePositiveNumber Source code
.isValidDistFun Source code
.isValidInputVector Source code
.makeNetwork Source code
.minimize Source code
.modelInputCheck Source code
.networksFromDistMatrix Source code
.performScudo Source code
.visitEdges Source code
ScudoResults Man page
ScudoResults-class Man page
consensusDownSignatures Man page
consensusDownSignatures,ScudoResults-method Man page
consensusUpSignatures Man page
consensusUpSignatures,ScudoResults-method Man page
distMatrix Man page
distMatrix,ScudoResults-method Man page
downSignatures Man page
downSignatures,ScudoResults-method Man page
groupsAnnotation Man page
groupsAnnotation,ScudoResults-method Man page
rScudo-package Man page
scudoClassify Man page Source code
scudoCytoscape Man page Source code
scudoModel Man page Source code
scudoNetwork Man page
scudoNetwork,ScudoResults-method Man page
scudoParams Man page
scudoParams,ScudoResults-method Man page
scudoPlot Man page Source code
scudoTest Man page Source code
scudoTrain Man page Source code
selectedFeatures Man page
selectedFeatures,ScudoResults-method Man page
show,ScudoResults-method Man page
upSignatures Man page
upSignatures,ScudoResults-method Man page
Matteo-Ciciani/scudo documentation built on May 17, 2019, 11:06 a.m.