API for Matteo-Ciciani/scudo
Signature-based Clustering for Diagnostic Purposes
| Global functions | |
|---|---|
| .addColors | Source code |
| .checkParams | Source code |
| .classifyInputCheck | Source code |
| .computeCompleteScores | Source code |
| .computeES | Source code |
| .computeFC | Source code |
| .computeScores | Source code |
| .computeSignature | Source code |
| .computeTestNetwork | Source code |
| .defaultDist | Source code |
| .featureSelection | Source code |
| .getScores | Source code |
| .inputCheck | Source code |
| .inputConverter | Source code |
| .isSingleLogical | Source code |
| .isSinglePositiveInteger | Source code |
| .isSinglePositiveNumber | Source code |
| .isValidDistFun | Source code |
| .isValidInputVector | Source code |
| .makeNetwork | Source code |
| .minimize | Source code |
| .modelInputCheck | Source code |
| .networksFromDistMatrix | Source code |
| .performScudo | Source code |
| .visitEdges | Source code |
| ScudoResults | Man page |
| ScudoResults-class | Man page |
| consensusDownSignatures | Man page |
| consensusDownSignatures,ScudoResults-method | Man page |
| consensusUpSignatures | Man page |
| consensusUpSignatures,ScudoResults-method | Man page |
| distMatrix | Man page |
| distMatrix,ScudoResults-method | Man page |
| downSignatures | Man page |
| downSignatures,ScudoResults-method | Man page |
| groupsAnnotation | Man page |
| groupsAnnotation,ScudoResults-method | Man page |
| rScudo-package | Man page |
| scudoClassify | Man page Source code |
| scudoCytoscape | Man page Source code |
| scudoModel | Man page Source code |
| scudoNetwork | Man page |
| scudoNetwork,ScudoResults-method | Man page |
| scudoParams | Man page |
| scudoParams,ScudoResults-method | Man page |
| scudoPlot | Man page Source code |
| scudoTest | Man page Source code |
| scudoTrain | Man page Source code |
| selectedFeatures | Man page |
| selectedFeatures,ScudoResults-method | Man page |
| show,ScudoResults-method | Man page |
| upSignatures | Man page |
| upSignatures,ScudoResults-method | Man page |
