Man pages for MatteoLacki/LFQBench2
Compare results of protein and peptide searches
| diff_isoquant_configs | Show differences between config files in ISOQuant protein... |
| get_intensities | Get intensiities from data that has them in columns (wide... |
| get_ratios_of_medians | Get species tags from a species column. |
| get_smoothed_data | Get smoothed distances to reference and estimates of standard... |
| get_species | Get species tags from a species column. |
| isoquant_project_csv | Prepare project csv with data for ISOQuant. |
| lread | Read a objects from paths to a named list. |
| parse_pattern | Parse column pattern. |
| plot_boxplots | Get species tags from a species column. |
| plot_density | Get species tags from a species column. |
| plot_dist_to_reference | Plot distances to the reference run. |
| plot_ratios | Get species tags from a species column. |
| plot_scatter | Get species tags from a species column. |
| read_isoquant_config | Read ISOQuant configuration. |
| read_isoquant_config_from_ini | Read ISOQuant ini configuration. |
| read_isoquant_config_from_report | Open ISOQuant config. |
| read_isoquant_configs | Read ISOQuant configurations. |
| read_isoquant_peptide_report | Read an ISOQuant csv peptide report. |
| read_isoquant_protein_report | Read an ISOQuant protein report. |
| read_isoquant_protein_reports | Read and combine multiple reports. |
| read_isoquant_simple_protein_report | Read a simple protein ISOQuant report. |
| read_wide_report | Read a file with intensities (peptide/protein/whatever) in... |
| simple_protein_report | An example of a simple protein report prepared with IsoQuant. |
| wide2long | Reshape a wide report into a long format. |
