GraphCpClust-package: This package is used to implement the change point estimation...

In Meiqian-Chen/GraphCpClust: This package is used to implement the change point estimation method and graph-based clustering method introduced in the three papers, and provide related data analysis.

Description

This package is the data and code support for three papers: Shi, Wu and Rao (2017); Shi, Wu and Rao (2018); Shi, Chen, Dong and Rao (2020). It provides change points estimation methods, graph-based clustering method , and related data analysis in these three papers.

Explanation

library(GraphCpClust)

help(CpBeeCell) #View the change points estimation method introduced in Shi, Wu and Rao (2017) and Shi, Wu and Rao (2018)

example("CpBeeCell") # The examples of change points estimation introduced in Shi, Wu and Rao (2017) and Shi, Wu and Rao (2018)

help(PathClust) # The graph-based clustering method introduced in Shi, Chen, Dong and Rao (2020)

example("PathClust") #Some examples of the graph-based clustering method introduced in Shi, Chen, Dong and Rao (2020)

SimulationPlot() #the Comparisons of graph-based clustering method and model-based clustering method

example("CpCOVID") #The examples of change points estimation introduced in Shi, Chen, Dong and Rao (2020)

Author(s)

Maintainer: Meiqian Chen [e-mail]

• Meiqian Chen

• Xiaoping Shi

• Hao Li

References

SHI, X.P., WU, Y.H. & RAO, C.R. (2017). Consistent and powerful graph-based change-point test for high-dimensional data. Proc Natl Acad Sci 114, 3873-8.

SHI, X.P., WU, Y.H. & RAO, C.R. (2018). Consistent and powerful non-Euclidean graph-based change-point test with applications to segmenting random interfered video data. Proc Natl Acad Sci 115, 5914-5919.

SHI, X.P., CHEN, M.Q., DONG, Y.C. & RAO, C.R. (2020). Exploring the space-time pattern of log-transformed infectious count of COVID-19: a clustering-segmented autoregressive sigmoid model.

Data support:

Lihoreau M, Chittka L, Raine NE (2016) Monitoring flower visitation networks and interactions between pairs of bumble bees in a large outdoor flight cage. PLoS One 11:e0150844.

Ciccone M, Gutwein M, Gunsalus KC, Geiger D (2014) Label free cell-tracking and division detection based on 2D time-lapse images for lineage analysis of early embryo development. Comput Biol Med 51:24-34. http://celltracking.bio.nyu.edu/

Wuhan-2019-nCoV: https://github.com/canghailan/Wuhan-2019-nCoV/

Meiqian-Chen/GraphCpClust documentation built on April 27, 2021, 10:40 a.m.