gmqn_normalize: Gaussian Mixture Quantile Normalization (GMQN)

In MengweiLi-project/gmqn: Gaussian Mixture Quantile Normalization (GMQN)

Description

The implementation of Gaussian Mixture Quantile Normalization (GMQN)

Usage

gmqn_normalize(m, um, probe, type = "450k", ref = "default",
  verbose = TRUE)

Arguments

m	The vector of methylation signal intensities.
um	The vector of umethylation signal intensities.
probe	the probe id for m and um.
type	The type of methylation array which can be '450k'(default) or '850k'
ref	The reference used to normalize data. By default, it uses the reference set up from GSE105018 which is also used in EWAS Datahub.

Value

A data frame contains normalized m and um, p value

MengweiLi-project/gmqn documentation built on Feb. 26, 2020, 11:35 a.m.