load_AUCell_genesets: Load geneset that will be used in calculating AUcell
In MengyiShu/RASC: An implementation of RNA Analysis of Single Cell
Description
Usage
Arguments
Value
Examples
Description
A function that load gmt file into R
Usage
1
load_AUCell_genesets(path, ignore_cols = 1)
Arguments
path
A gmt file contains all the pathway score information
ignore_cols
depends on the format of gmt file exclude the headers
Value
Returns an list contain name of the pathway and its corresponding genes
that enriched in that gene set
Examples
1
2
3
hallmarks = load_AUCell_genesets("h.all.v7.4.symbols.gmt", ignore_cols=2)
# Access hallmarks
hallmarks
MengyiShu/RASC documentation built on Dec. 17, 2021, 3:23 a.m.
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Description Usage Arguments Value Examples
Description
A function that load gmt file into R
Usage
1 | load_AUCell_genesets(path, ignore_cols = 1)
|
Arguments
path |
A gmt file contains all the pathway score information |
ignore_cols |
depends on the format of gmt file exclude the headers |
Value
Returns an list contain name of the pathway and its corresponding genes that enriched in that gene set
Examples
1 2 3 | hallmarks = load_AUCell_genesets("h.all.v7.4.symbols.gmt", ignore_cols=2)
# Access hallmarks
hallmarks
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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