NEWS.md

In Miachol/BioInstaller: Integrator of Bioinformatics Resources

BioInstaller 0.3.7

New features

• support bitbucket repo
• remove function "check_shiny_dep" use pacman install dependences
• add new databases and tools (meta and files)

Minor bugs fixed

• fix "version_avaliable" to "version_available" in ~10 item

BioInstaller 0.3.6

New features

• add copy_plugins and copy_configs functions to restore the plugins and config
• use fromJSON to access the github APIs, which can avoid the SSL problem on windows platform

BioInstaller 0.3.5.7000

Minor bugs fixed

• Add conda and spack in the Docker image

BioInstaller 0.3.5.6000

New features

• Shiny application supported

• Numbers increased of included items, especialy the databases

• Use github forum

• Add parameter overwrite in install.bioinfo

• Add Opencpu, Shiny and Rstudio service in Docker container

• Use 'Setting' module in Shiny application to manage the variables

Minor bugs fixed

• Check and confirm delete the existing dir only when clone a github project

BioInstaller 0.3.3

New features

• Multiple resources file be supported

• Adjust and set db, github, nongithub, web and docker in inst/extdata/config

• Meta information of software and database be added in newly supported items

• Decompress can be auto-recognized

• Docker supported

Minor bugs fixed

• change.info default is to write tempfile() now

• Fixed a bug when set save.to.db to FALSE. It can raise installed fail

BioInstaller 0.2.1

New features

• ANNOVAR databases can be download using inst/extdata/databases/ANNOVAR.toml

• Move databases toml file to inst/extdata/databases/

• local.source be supported (Don't need download the source code again when it were download already)

• Function docker.pull and docker.search be added to download and search docker repo

• Function craw.all.versions be added to crawl source code of all version (Sotwares or databases)

BioInstaller 0.1.2

New features

• R# CMD #R# marked the R CMD need to be runed

• glue parse be supported

• Softwares versions of github.cfg be fetched from github API

• destdir and download.dir can be setted respectively

• verbose default is TRUE, show log infomation

Minor bugs fixed

• Fix unlink() clean tests files fail on windows (force = TRUE)

Miachol/BioInstaller documentation built on Feb. 1, 2023, 8:11 a.m.