knitr::opts_chunk$set(comment = "#>", collapse = TRUE, screenshot.force = FALSE) get_dt <- function(item) { Name <- names(item) Description <- unname(unlist(lapply(item, function(x){ if (is.na(x["description"])) return("") return(x["description"])})) ) Publication <- unname(unlist(lapply(item, function(x){ if (is.na(x["publication"])) return("") return(x["publication"])})) ) data.frame(Name, Description) }
Partial meta information of tools/scripts and databases are saved in the followed files.
You can get the file list by command unname(unlist(get.meta()[1:4]))
.
We do not show the meta information of annovarR supported items in this vignette.
library(BioInstaller) meta_info <- get.meta(read.config.params = list(rcmd.parse = TRUE)) unname(unlist(meta_info[1:4]))
The followed tables show partial items description that have been collected in BioInstaller package including Github items
, Non-github items
and Database items
.
DT::datatable(get_dt(meta_info$github$item), escape = FALSE)
DT::datatable(get_dt(meta_info$nongithub$item), escape = FALSE)
DT::datatable(get_dt(meta_info$db$item), escape = FALSE)
BioInstaller also provides a simplified and curated list of resources for learning bioinformatics, such as sequencing method, web service, command-line tools and database resources. You can get it from here.
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