plot_vairants: Plot variants

In MicrobialGenomics/covidapp: What the Package Does (One Line, Title Case)

Plot variants

Description

Plot variants

Usage

plot_vairants(
  df,
  type = "density",
  var = "freq",
  pal = "mg",
  pal_dir = -1,
  clade = NULL,
  plotly = TRUE
)

Arguments

df	output of function prepro_variants
type	Class of plot. Options: density or bar
var	variable to plot. Options: "freq" and "counts"
pal	Used palette
pal_dir	Palete direction order. Options: 1 and -1
clade	List with clade to plot
plotly	boolean indicating if output plot must be plotly

Value

plotly or ggplot object

MicrobialGenomics/covidapp documentation built on Feb. 9, 2023, 1:04 a.m.