MK_WG_Tom: MK_WG_Tom: One-step WGCNA analysis.

In MikuGene/MikuGene: A simple bioinformatics analysis software package.

MK_WG_Tom: One-step WGCNA analysis.

Description

One-step WGCNA analysis based on WGCNA R package.

Usage

MK_WG_Tom(x, name = "temp", nGene = 10000, Save = T)

Arguments

x	A two-dimensional matrix. (Column: samples; Row: features)
name	Custom naming of this process. Default "temp".
nGene	The number of genes will be used for co-expression network analysis.
Save	Create a backup folder under the working path, and store the resulting object as a name_WGtom_backup.rds file. Meanwile the co-expression network diagram will be drawn and saved.

Details

Please: citation("WGCNA")

Value

A list (WG_Tom) of five objects: x, MEs (Column: each ME; Row: each sample), Colors (color corresponding to each gene), Power (the power of WGCNA soft-threshold), TOM (the calculated topological matrix).

Note

—- MikuGene Bioinformatics Ecological Community.

Author(s)

Lianhao Song (CodeNight)

MikuGene/MikuGene documentation built on March 24, 2022, 1:28 a.m.