makebmDataFromData-methods: makebmDataFromData method generics

In MingLi-929/BMplot: BMplot for Base Modification Visulization

makebmDataFromData method generics

Description

makebmDataFromData method generics

makebmDataFromData method for CompressedGRangesList objects

makebmDataFromData method for GRanges objects

makebmDataFromData method for list objects

makebmDataFromData method for data.frame objects

Usage

makebmDataFromData(data, sampleNames = NULL)

## S4 method for signature 'CompressedGRangesList'
makebmDataFromData(data, sampleNames = NULL)

## S4 method for signature 'GRanges'
makebmDataFromData(data, sampleNames = NULL)

## S4 method for signature 'list'
makebmDataFromData(data, sampleNames = NULL)

## S4 method for signature 'data.frame'
makebmDataFromData(data, sampleNames = NULL)

Arguments

data	lists object
sampleNames	the name of each samples

Details

The objects in data must have specific forms. Colunms should be features, which should be organized in the order of "chr", "pos", "value1", "value2(optional)". chr stands for chromosome. pos stands for position on chromosome, also known as coordinates. value1/2 stands for the value on each base. The colnames can be any character but must be in the order. Rows stands for each observation.

The objects in data must have specific forms. Colunms should be features, which should be organized in the order of "chr", "pos", "value1", "value2(optional)". chr stands for chromosome. pos stands for position on chromosome, also known as coordinates. value1/2 stands for the value on each base. The colnames can be any character but must be in the order. Rows stands for each observation.

MingLi-929/BMplot documentation built on Dec. 11, 2024, 6:06 p.m.