Files in Model-R/modleR
A Workflow for Ecological Niche Models
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.gitignore
CONTRIBUTING.md
DESCRIPTION
NAMESPACE
R/clean.R
R/create_buffer.R
R/crop_model.R
R/data.R
R/do_any.R
R/do_many.R
R/ensemble_model.R
R/euclidean.R
R/final_model.R
R/geo_filt.R
R/model_fit.R
R/modleR.R
R/rescale_layer.R
R/select_variables.R
R/setup_sdmdata.R
R/write_sesssion_info.R
README.Rmd
README.md
README_files/figure-gfm/dataset-1.png
README_files/figure-gfm/ensplot-1.png
README_files/figure-gfm/plot_final-1.png
_pkgdown.yml
codecov.yml
data-raw/create_data.R
data-raw/pcavars.R
data/example_mask.rda
data/example_occs.rda
data/example_vars.rda
docs/.nojekyll
docs/404.html
docs/CONTRIBUTING.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/buffer_and_randomPoints.html
docs/articles/buffer_and_randomPoints_files/figure-html/bufferdistance-1.png
docs/articles/buffer_and_randomPoints_files/figure-html/buffermax-1.png
docs/articles/buffer_and_randomPoints_files/figure-html/buffermean-1.png
docs/articles/buffer_and_randomPoints_files/figure-html/buffermedian-1.png
docs/articles/buffer_and_randomPoints_files/figure-html/centroid-1.png
docs/articles/buffer_and_randomPoints_files/figure-html/geog-1.png
docs/articles/buffer_and_randomPoints_files/figure-html/max_env-1.png
docs/articles/buffer_and_randomPoints_files/figure-html/plotdataset-1.png
docs/articles/buffer_and_randomPoints_files/figure-html/usr-1.png
docs/articles/buffer_res/envdist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png
docs/articles/buffer_res/mindist_distance/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png
docs/articles/buffer_res/mindist_maxdist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png
docs/articles/buffer_res/mindist_meandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png
docs/articles/buffer_res/mindist_mediandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png
docs/articles/buffer_res/mindist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png
docs/articles/fig01_workflow.jpg
docs/articles/fig05_finalmodel.png
docs/articles/figs/fig04_buffer.png
docs/articles/index.html
docs/articles/modleR.html
docs/articles/modleR.png
docs/articles/modleR_files/figure-html/dataset-1.png
docs/articles/modleR_files/figure-html/ensplot-1.png
docs/articles/modleR_files/figure-html/plot_final-1.png
docs/articles/projection.html
docs/articles/projection_files/figure-html/dataset2-1.png
docs/articles/projection_files/figure-html/enm1-1.png
docs/articles/projection_files/figure-html/plotdataset-1.png
docs/articles/projections/Abarema_langsdorffii/proj1/final_models/Abarema_langsdorffii_svme_raw_mean.png
docs/articles/projections/Abarema_langsdorffii/proj1/partitions/svme_cont_Abarema_langsdorffii_1_1.png
docs/articles/projections/Abarema_langsdorffii/proj1/partitions/svme_cont_Abarema_langsdorffii_2_1.png
docs/articles/projections/Abarema_langsdorffii/proj1/partitions/svme_cont_Abarema_langsdorffii_3_1.png
docs/articles/projections/Abarema_langsdorffii/proj2/final_models/Abarema_langsdorffii_svme_raw_mean.png
docs/articles/projections/Abarema_langsdorffii/proj3/final_models/Abarema_langsdorffii_svme_raw_mean.png
docs/articles/projections/Abarema_langsdorffii/proj4/final_models/Abarema_langsdorffii_svme_raw_mean.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/create_buffer-1.png
docs/reference/create_buffer.html
docs/reference/ensemble_model.html
docs/reference/example_mask.html
docs/reference/example_occs.html
docs/reference/example_vars.html
docs/reference/figures/README-dataset-1.png
docs/reference/figures/README-ensplot-1.png
docs/reference/figures/README-plot_final-1.png
docs/reference/figures/logo.png
docs/reference/figures/modleR.png
docs/reference/final_model.html
docs/reference/index.html
docs/reference/model_fit.html
docs/reference/modleR.html
docs/reference/setup_sdmdata.html
docs/sitemap.xml
index.md
inst/CITATION
inst/REFERENCES.bib
man/create_buffer.Rd
man/ensemble_model.Rd
man/example_mask.Rd
man/example_occs.Rd
man/example_vars.Rd
man/figures/README-dataset-1.png
man/figures/README-ensplot-1.png
man/figures/README-plot_final-1.png
man/final_model.Rd
man/model_fit.Rd
man/modleR.Rd
man/setup_sdmdata.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-01-setup.R
tests/testthat/test-02-buffer.R
tests/testthat/test-03-do_any.R
tests/testthat/test-04-do_many.R
tests/testthat/test-05-final_model.R
tests/testthat/test-06-ensemble_model.R
vignettes/fig01_workflow.jpg
vignettes/fig05_finalmodel.png
vignettes/modleR.Rmd
vignettes/modleR.png
