CopyNumber450kCancer-package: Baseline Correction for Accurate Copy Number Calling in 450k...
In Molmed/CopyNumber450kCancer: Baseline Correction for Copy Number Data from Cancer Samples
Description
Details
Author(s)
See Also
Description
The 450k arrays are frequently used in the epigenetic studies, the copy number calling from the 450k data is possible but it faces some difficulties in cancer samples regarding the determination of the copy number status due to the false sample centering and baseline shifting. Without solving this issue the copy number calling will be inaccurate. CopyNumber450kCancer-package was designed to correct the baseline in cancer samples using the Maximum Density Peak Estimation.
The main advantages for CopyNumber450kCancer-package are: Fast (few seconds per sample), high accuracy rate, in-sample correction, no input parameters needed, low computer sources required, and adaptable for 450k-similar technologies.
Details
Package: CopyNumber450kCancer
Type: Package
Version: 1.0.4
Date: 2015-08-17
License: GPL (>= 2)
Author(s)
Nour-al-dain Marzouka
Maintainer: Nour-al-dain Marzouka <nour.dna.eng@gmail.com>
See Also
https://github.com/Molmed/CopyNumber450kCancer
Molmed/CopyNumber450kCancer documentation built on Sept. 2, 2020, 8:23 a.m.
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Description Details Author(s) See Also
Description
The 450k arrays are frequently used in the epigenetic studies, the copy number calling from the 450k data is possible but it faces some difficulties in cancer samples regarding the determination of the copy number status due to the false sample centering and baseline shifting. Without solving this issue the copy number calling will be inaccurate. CopyNumber450kCancer-package was designed to correct the baseline in cancer samples using the Maximum Density Peak Estimation.
The main advantages for CopyNumber450kCancer-package are: Fast (few seconds per sample), high accuracy rate, in-sample correction, no input parameters needed, low computer sources required, and adaptable for 450k-similar technologies.
Details
| Package: | CopyNumber450kCancer |
| Type: | Package |
| Version: | 1.0.4 |
| Date: | 2015-08-17 |
| License: | GPL (>= 2) |
Author(s)
Nour-al-dain Marzouka
Maintainer: Nour-al-dain Marzouka <nour.dna.eng@gmail.com>
See Also
https://github.com/Molmed/CopyNumber450kCancer
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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