Man pages for MolyWang/microCompet
Identify A Microbe's Potential Nutrition Competitor From Microbiota
| allSugarScoresForOneGenome | Calculate Completeness Of All Sugar Degradation Pathways... |
| calculateStepsForOneSugar | Calculate Number Of Sugar Specific Degradation Enzymes In A... |
| calculateTotalStepsForAllSugars | Calculate Total Steps In The Degradation Pathway Of All... |
| checkUserED | Check Whether The User Input ED Dataframe Satisfies Function... |
| compareTwoGenomes | Compare Two Genomes And Count Number Of Shared Genes |
| competeMicrobiota | Visualize A Microbe's Competition For Simple Sugars With... |
| completenessForAllPathways | Evaluate The Completeness Of All Sugar Degradation Pathways |
| constructFullNetwork | Build A Full Simple Sugar Degradation Network For One Genome |
| createEdgeFrame | Create A Data.frame To Represent All Edges in fullNetwork |
| createNodeFrame | Create A Data.frame To Represent All Vertices in fullNetwork. |
| EnzymaticReactions | Enzymatic Reactions Of Simple Sugar Degradation |
| EnzymeDistribution | Distribution Of Simple Sugar Degradation Enzymes In Microbes |
| extractCarboGenes | Extract Simple Sugar Degradation Genes from A Microbial... |
| GenomesInfo | Information About Genomes Included In EnzymeDistribution |
| overallSimilarity | Compare Overall Similarity Of A Genome And Microbiota Members |
| runMicroCompet | Launch Shiny App For microCompet |
| transformToVector | Transform A Vector Of Gene Names Into A Vector Of 0 And 1 |
