EnzymaticReactions: Enzymatic Reactions Of Simple Sugar Degradation

In MolyWang/microCompet: Identify A Microbe's Potential Nutrition Competitor From Microbiota

Enzymatic Reactions Of Simple Sugar Degradation

Description

A list of 72 enzymatic reactions that involve in microbial degradation of several simple sugars. Because some reactions can be catalyzed by more than one enzymes, the dataset have more than 72 rows.

Usage

EnzymaticReactions

Format

A matrix with 96 rows and 6 variables:

Gene

Name of the gene that encodes the enzyme represented in this row.

Reaction.EC

Enzyme Commission (EC) number of this enzyme, assigned based on the reaction it catalyzes.

Enzyme

Full name of the enzyme.

Substrate

Starting material of the enzyme. If one reaction requires more than one substrates, the reaction is split multiple lines.

Product

Product of this enzymatic reaction. If more than one products are produced, they are split into multiple lines.

Sugar

The sugar degradation pathway this enzyme participates in.

Source

MetaCyc from metacyc.org

Examples

 ## Not run: 
  head(EnzymaticReactions)

## End(Not run)

MolyWang/microCompet documentation built on Feb. 26, 2023, 9:29 p.m.