call_doublets: call doublets by new threshold

In Moonerss/scrubletR: Run scrublet in r

call doublets by new threshold

Description

Call trancriptomes as doublets or singlets

Usage

call_doublets(
  scrublet_obj,
  threshold = NULL,
  python_home = Sys.which("python"),
  return_obj = TRUE
)

Arguments

scrublet_obj	The result from get_init_scrublet
threshold	Doublet score threshold for calling a transcriptome a doublet. If None, this is set automatically.
python_home	The python home directory where Scrublet is installed
return_obj	If FALSE, only return a logical vector show doublet, or a python scrublet object.

Value

return a logical vector or a python scrublet object.

Moonerss/scrubletR documentation built on Oct. 25, 2024, 8:06 a.m.