add_Aphia_ID: Add WoRMS Aphia Id Add WoRMS Aphia Id to predator or prey...

In MortenVinther/FishStomachs: Compilation of stomach contents data

Add WoRMS Aphia Id Add WoRMS Aphia Id to predator or prey species where missing.

Description

Add WoRMS Aphia Id Add WoRMS Aphia Id to predator or prey species where missing.

Usage

add_Aphia_ID(
  stom,
  Worms_Aphia_ID,
  predator_or_prey = c("predator", "prey"),
  stop_if_errror = FALSE,
  delete_first = FALSE,
  verbose = FALSE,
  match_item = c("item", "scientific")[2]
)

Arguments

stom	Stomach data set of class STOMobs, from e.g. read_exchange_data).
Worms_Aphia_ID	File Name including WoRMS Aphia ID by Latin (or other) predator or prey name.file 'WoRM_AphiaID.csv' in the package /inst directory is used as default.
predator_or_prey	Add missing Aphia ID for predator | prey.
stop_if_errror	Logical for stopping if AphiaID is not found for all.
delete_first	Delete all existing WoRMS Aphia Id before adding new
verbose	Show information on progress
match_item	Variable name in WoRM_AphiaID.csv ("item" or "scientific') used to assign WoRMS Aphia ID.

Value

Stomach data on internal format.

Examples

## Not run: add_Aphia_ID(X)

MortenVinther/FishStomachs documentation built on Feb. 14, 2025, 7:33 a.m.