CharacterizeMSPeaks: analyze ftms mass-spec data

In MoseleyBioinformaticsLab/FTMS.peakCharacterization: Functionality for Detecting and Characterizing Peaks

analyze ftms mass-spec data

Description

This class allows you to analyze mass spec data, and controls the execution of reading in the mass

Methods

Public methods

• CharacterizeMSPeaks$load_file()

• CharacterizeMSPeaks$find_peaks()

• CharacterizeMSPeaks$summarize()

• CharacterizeMSPeaks$save_peaks()

• CharacterizeMSPeaks$write_zip()

• CharacterizeMSPeaks$set_peak_finder()

• CharacterizeMSPeaks$filter_raw_scans()

• CharacterizeMSPeaks$run_all()

• CharacterizeMSPeaks$prep_data()

• CharacterizeMSPeaks$add_regions()

• CharacterizeMSPeaks$run_splitting()

• CharacterizeMSPeaks$new()

• CharacterizeMSPeaks$clone()

---

Method load_file()

Usage

CharacterizeMSPeaks$load_file()

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Method find_peaks()

Usage

CharacterizeMSPeaks$find_peaks(...)

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Method summarize()

Usage

CharacterizeMSPeaks$summarize()

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Method save_peaks()

Usage

CharacterizeMSPeaks$save_peaks()

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Method write_zip()

Usage

CharacterizeMSPeaks$write_zip()

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Method set_peak_finder()

Usage

CharacterizeMSPeaks$set_peak_finder(in_function)

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Method filter_raw_scans()

Usage

CharacterizeMSPeaks$filter_raw_scans()

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Method run_all()

Usage

CharacterizeMSPeaks$run_all()

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Method prep_data()

Usage

CharacterizeMSPeaks$prep_data()

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Method add_regions()

Usage

CharacterizeMSPeaks$add_regions()

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Method run_splitting()

Usage

CharacterizeMSPeaks$run_splitting()

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Method new()

Usage

CharacterizeMSPeaks$new(
  in_file,
  metadata_file = NULL,
  out_file = NULL,
  peak_finder = NULL,
  temp_loc = NULL,
  raw_scan_filter = NULL
)

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Method clone()

The objects of this class are cloneable with this method.

Usage

CharacterizeMSPeaks$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

MoseleyBioinformaticsLab/FTMS.peakCharacterization documentation built on April 27, 2022, 3:32 a.m.