status: Check job status on JPred REST interface.

In MoseleyBioinformaticsLab/jpredapir: R Access to JPred API

Description

Check status of the submitted job.

Usage

status(jobid, results_dir_path = NULL, extract = FALSE, max_attempts = 10,
  wait_interval = 60, silent = FALSE,
  host = "http://www.compbio.dundee.ac.uk/jpred4/cgi-bin/rest",
  jpred4 = "http://www.compbio.dundee.ac.uk/jpred4")

Arguments

jobid	Job id.
results_dir_path	Directory path where to save results if job is finished.
extract	Extract or not results into directory (default = FALSE).
max_attempts	Maximum number of attempts to check job status (default = 10).
wait_interval	Wait interval before retrying to check job status in seconds (default = 60).
silent	Should the work be done silently? (default = FALSE).
host	JPred host address.
jpred4	JPred address for results retrieval.

Value

Response.

Examples

## Not run: 
## Not run ---
status(jobid = "jp_K46D05A")
status(jobid = "jp_K46D05A", results_dir_path = "jpred_sspred/results")
status(jobid = "jp_K46D05A", results_dir_path = "jpred_sspred/results", extract = TRUE)

## End(Not run)

MoseleyBioinformaticsLab/jpredapir documentation built on May 20, 2019, 1:13 p.m.