OneScatter: Generates a ggobject of one scater plot

In Mthrun/dbt.FlowCytometry: Databionics Toolbox for the Analysis of Fluorescence-Activated Cell Sorting (FACS) Data

Generates a ggobject of one scater plot

Description

Generates a ggobject of one scater plot for either plotting directy or plotting a panel via multiplot

Usage

OneScatter(ClsAndData, Xvar, Yvar, Clsvar = "Cls", zero.rm = TRUE, ...)

Arguments

ClsAndData	numerical matrix [1:n,1:d+1] with d features and one classification vector as a column of this matrix
Xvar	string for column name of first feauture
Yvar	string for column name of second feauture
Clsvar	otional, string for column name of classification, default "Cls"
zero.rm	TRUE: removes zeros
...	further parameters for Classplot

Value

ggobject defining a two-dimensional scatter plot

Author(s)

michael thrun

See Also

Classplot,

multiplot

Examples

## Not run: 
DataMZL_T1=ReadScatter(nameMZL_T1,path)
DataMZL_T2=ReadScatter(nameMZL_T2,path)

gg1=OneScatter(DataMZL_T1,"CD5","CD19",Size=1,main="")
gg2=OneScatter(DataMZL_T1,"CD10","CD19",Size=1,main="")
gg3=OneScatter(DataMZL_T1,"CD23","CD20",Size=1,main="")
gg4=OneScatter(DataMZL_T1,"FMC7","CD20",Size=1,main="")
gg5=OneScatter(DataMZL_T2,"Kappa","Lambda",Size=1,main="")
gg6=OneScatter(DataMZL_T1,"CD79b","IgM",Size=1,main="")
#panel visualization
dbt.Plot::multiplot(gg1,gg2,gg3,gg4,gg5,gg6,cols = 3)#+ggtitle("MZL 12920")

## End(Not run)

Mthrun/dbt.FlowCytometry documentation built on June 5, 2023, 10:30 a.m.