Man pages for Mushriq/mixmap
Test package to share mixmap code

add_predictions	Use a batch of models to make predictions on new data
append_predictions_to_seurat	Create a gene expression matrix to predict dependencies
change_colname	Changes the value column name of a dataframe
download_data	Download study files into data folder
fit_depmap_models	Make a list of predictive models of dependencies
fit_models_and_save	Make a list of models and save as file
fit_models_in_parallel	Make a list of models and save as file (parallel)
get_cell_line_name	Convert arxspan ID to cell line name
get_demo_samples	Get demo samples
get_double_digit_number	Vectorized double-digit converter
Get_Double_Digit_Number	Vectorized double-digit converter
get_legend	Extract ggplot legend
get_original_data	Retrieve the training data
get_variable_predictions	Find most variable predictions
gg_color_hue	Get a palette of specified size
helper_plot_top_contributors	Plot top contributions (internal function)
make_bulk_matrix_from_files	Create a gene expression matrix to predict dependencies
make_bulk_matrix_from_seurat	Create a gene expression matrix to predict dependencies
make_new_data_predictions	Use a model to make predictions on new data
make_xgb_model	Make predictive models of dependencies
plot_contribution_to_new_samples	Plot feature contributions to new sample predictions
plot_contribution_to_sample	Plot feature contributions to sample predictions
plot_contribution_to_training_samples	Plot feature contributions to sample predictions from the...
plot_predictions_dimplot	Overlay predictions on a dimensional reduction plot
plot_shap_scatter	Plot Shapley values vs feature values
plot_shap_scatter_for_new_samples	Plot SHAP vs Feature Value scatter for new data.
plot_shap_scatter_for_training_samples	Plot SHAP vs Feature Value scatter for training data.
plot_top_contributors	Plot top contributions
prep_features_lineage	Prepare the lineage features table
show_msg	Display message
summarize_contributions	Summarize SHAP values
summarize_error	Summarize prediction error
summarize_models	Summarize models
summarize_predictions	Summarize predictions
summarize_predictions_in_parallel	Summarize predictions in parallel